Gene Information

Name : cce_3960 (cce_3960)
Accession : YP_001805374.1
Strain :
Genome accession: NC_010546
Putative virulence/resistance : Virulence
Product : two-component response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4090845 - 4091603 bp
Length : 759 bp
Strand : +
Note : -

DNA sequence : 
ATGTTGTCTTTCGATACGATTCAAACTCCCCCTAACCCCTCTGTTGTTAATACTCACCGCATCCTTGTGGTAGAAGATGA
AGATGTCATTCGCGATATGATTGTTCTGGCCTTAGAAGATGAAGGCTATGAGATCACTGCTGTCAATGATGGGCGTAGTG
CTTTAAATTTACTACAACAAGAAGACAAAAATTCCCAGGCCACAGAAACAGAATTTGATTTATTAGTTTTGGATTTAATG
CTCCCCCAAGTTAACGGTTTAGATATCTGCCGTCTTTTGCGTTATCAGGGCAATATTATTCCCATTTTGATCCTCAGTGC
CAAAGCCAGCGAAACAGACCGTGTATTGGGCTTAGAAGTGGGTGCTGACGATTATTTAACTAAACCCTTTAGTATGCGAG
AGTTGGTCGCTCGATGTCGGGCTTTAATTCGTCGTCAAAACTTAACCAATTCTTCTTCGAGTTCGGTTAAACAGTTTCGT
GATATTACCCTCTATACCCAAGAATGCCGAGTAACAGTGGGAGAACAAGAAATTAGTCTTTCTCCTAAAGAATATCGCTT
ATTAGAATTGTTTATGAGCTATCCCCGTCGTGTTTGGTCACGGGATCAATTAATTGAACAAATTTGGGGGCCTGATTTTT
TGGGAGATACCAAAACCGTTGATGTTCATATTCGTTGGTTACGGGAAAAACTAGAAAAAGATCCTAGCCAACCCGAATAT
TTAATCACGGTTCGAGGGTTTGGTTATCGCTTTGGCTAG

Protein sequence : 
MLSFDTIQTPPNPSVVNTHRILVVEDEDVIRDMIVLALEDEGYEITAVNDGRSALNLLQQEDKNSQATETEFDLLVLDLM
LPQVNGLDICRLLRYQGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCRALIRRQNLTNSSSSSVKQFR
DITLYTQECRVTVGEQEISLSPKEYRLLELFMSYPRRVWSRDQLIEQIWGPDFLGDTKTVDVHIRWLREKLEKDPSQPEY
LITVRGFGYRFG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 2e-35 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-35 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cce_3960 YP_001805374.1 two-component response regulator AE016830.1.gene1681. Protein 1e-46 44
cce_3960 YP_001805374.1 two-component response regulator NC_012469.1.7686381. Protein 2e-42 42
cce_3960 YP_001805374.1 two-component response regulator NC_012469.1.7685629. Protein 1e-40 42
cce_3960 YP_001805374.1 two-component response regulator HE999704.1.gene1528. Protein 2e-30 41
cce_3960 YP_001805374.1 two-component response regulator HE999704.1.gene2815. Protein 1e-42 41
cce_3960 YP_001805374.1 two-component response regulator AE000516.2.gene3505. Protein 5e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cce_3960 YP_001805374.1 two-component response regulator VFG1563 Protein 9e-36 42
cce_3960 YP_001805374.1 two-component response regulator VFG1702 Protein 9e-36 42
cce_3960 YP_001805374.1 two-component response regulator VFG1389 Protein 3e-28 41