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Name : lysS (cce_3462) Accession : YP_001804876.1 Strain : Genome accession: NC_010546 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 3563215 - 3564936 bp Length : 1722 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCTTCCAATCAACCCCAACGGGAACCCCATTCAGCCTCTAGTTTAGAAGAAATCCGCGCCACACGCCTCGAAAAAGT AGAACAGTTGAAACAATTGGGTTTAATCCCCTATGCGTATCAATGGCAATCTACCCATGATGCTGCAACATTACAGGATA AATATACCAATTTAAAGGATGGAGAAGAAGTAGCGGTAGATGTTGCGATCGCAGGAAGAATTATCGCCCGTCGTGTCTTT GGAAAACTAGCCTTTTTCAACCTACAAGACGAAACTGGAACCATTCAATTATATCTCGATAAAAAAGAAATTCAGGCGCA CATGAGTGATCTTGACAGTGCCTTTAATCATCTCAAAAAATTGACCGATACAGGGGATATTATTGGTGTAAAGGGTAGTA TTAAAAGAACAGAAAAAGGAGAACTTTCTGTTAAAGTTAAACAATACCAAATCTTAACGAAGTCCTTATTACCTTTACCG GATAAATGGCACGGTTTAACGGATACTGAAAAACGTTACCGTCAACGTTATGTAGACTTAATTGTTAATCCCCAAGTTAG GCAAACCTTTCGTCGTCGTGCAGAAATTACTGCTTCTATTCGACGCTATTTAGACAAACAGGGTTTTATTGAGATAGAAA CCCCTGTTTTACAGTCGGAAGCAGGGGGCGCAGAAGCCCGTCCGTTCATCACCTATCATAACACCTTGGAGATGGATTTA TATCTCAGAATTGCCACAGAATTGCATCTCAAACGGTTAATTGTGGGGGGATTTGAAAAAGTATTTGAACTAGGTAGAAT CTTCCGTAATGAAGGGGTTTCAACCAAACACAACCCTGAATTTACCTCCATCGAAGTCTATCAAGCTTACGCTGATTATA ACGATATGATGGAGCTTACCGAAGCAATTATTACCACAGCAGCAGAAGAGGTTTTAGGGACGTTAAAGATTACTTATCAA GGAGAAGACATCGACTTATCAACTCCTTGGCGACGGGTAACCATGCACGATATTGTGAAAGAAAAAAGTGGTTTAGATTT TGAACAATTTAAAGACTTTGAAACCGCTAAAAATGCAGTAAAAGAAGTCGGTTTAGACGTTCCAGAAACTTGTCAAAGTT TAGGAAAATTAATTAATGAAGTGTTTGAGCAAACCGTAGAAGAAACCTTAATTCAACCGACATTTATCCTAGATTTTCCT GTAGAAATTTCCCCTTTAGCTAAGCCTCATCGCAATAAAGAAGGATTAGTTGAACGCTTTGAATTATATATTGTGGGACG GGAATTAGCTAATAGTTTCTCAGAATTAACTGATCCTATTGATCAAAGAAACAGACTAGAAAAACAAGCCGAACAAAAAG CAGCCGGTGACTTAGAGGCCCATAGTGTTGACGAAGATTTCTTAACCGCCTTAGAATATGGAATGCCTCCTACGGGAGGA TTAGGCATTGGCATTGATCGCCTGATTATGTTATTAACTGATTCTGCTAGTATTCGGGATGTTATTGCTTTCCCCTTGCT CAAAAATTATAGTTATGCAATCAAATCCTTTGACTATGATCCAGATCAAAAAATTCTGAGGGTTGAATTTTCTCATGGCG GTGTTTATCAATATCACGATGTTCCTAAATCTGTCTATGAAGGATTAGCAAAATCTCCCTCAAAAGGACAGTATTTTAAT GCTGAAATTAAAGAAAAATTTGGGTTTGATCGGGAAAATTAA Protein sequence : MSSNQPQREPHSASSLEEIRATRLEKVEQLKQLGLIPYAYQWQSTHDAATLQDKYTNLKDGEEVAVDVAIAGRIIARRVF GKLAFFNLQDETGTIQLYLDKKEIQAHMSDLDSAFNHLKKLTDTGDIIGVKGSIKRTEKGELSVKVKQYQILTKSLLPLP DKWHGLTDTEKRYRQRYVDLIVNPQVRQTFRRRAEITASIRRYLDKQGFIEIETPVLQSEAGGAEARPFITYHNTLEMDL YLRIATELHLKRLIVGGFEKVFELGRIFRNEGVSTKHNPEFTSIEVYQAYADYNDMMELTEAIITTAAEEVLGTLKITYQ GEDIDLSTPWRRVTMHDIVKEKSGLDFEQFKDFETAKNAVKEVGLDVPETCQSLGKLINEVFEQTVEETLIQPTFILDFP VEISPLAKPHRNKEGLVERFELYIVGRELANSFSELTDPIDQRNRLEKQAEQKAAGDLEAHSVDEDFLTALEYGMPPTGG LGIGIDRLIMLLTDSASIRDVIAFPLLKNYSYAIKSFDYDPDQKILRVEFSHGGVYQYHDVPKSVYEGLAKSPSKGQYFN AEIKEKFGFDREN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 1e-109 | 48 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 3e-87 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001804876.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 7e-110 | 48 |
