Gene Information

Name : cce_3378 (cce_3378)
Accession : YP_001804792.1
Strain :
Genome accession: NC_010546
Putative virulence/resistance : Virulence
Product : two-component response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3477785 - 3478462 bp
Length : 678 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAATTTTAGTTGTCGAAGATGATGAAAACATAGTCATCCCCATTGAAGAGTATCTTGACGAACAAAACTATATCGT
TGAAGTTGCATCTGATGGGGAAGTCGCTAGAGACTTTCTAGATGTTTTCGATTATGACCTCATCGTCTTGGATGTCATGT
TGCCGAAACTTGATGGTATTGCTTTATGTCAGCAACTACGAGCTAATGGCTGTAAAACACCAATTTTGATGTTAACAGCC
AGAGACACAATTCAAGATAGGGTAAAAGGTCTTGATGCAGGTGCCGATGATTATTTAATCAAGCCTTTTGACCTCGAAGA
ACTCTCAGCAAGAATCCGTGCTTTACTGCGTCGAGGAGAAACGGCGTTGCCACCGATTTTAACCTGGGGAGACTTATGTG
TTGATCCTAATACTTGTGAAGTAACGTATCAACAACAAGCATTAAACCTAAGTCCAAAAGAATATCGTTTGTTAGAGTTC
TTTTTGCGGCATCCTCGTCGTATGTTTAGCCGTTCGCAACTGTTGGATCATCTCTGGGCTATGGATCAAATTCCTGAGGA
GGCTACCGTGAAAGCCCATATTAGTAGTTTACGTCAAAAGCTGAAAACGGCTGGCCTTGAATCGGATGTGATTGAAACAG
TGTATGGCTTAGGATATCGTCTTAAAGAGTCCCCATAG

Protein sequence : 
MKILVVEDDENIVIPIEEYLDEQNYIVEVASDGEVARDFLDVFDYDLIVLDVMLPKLDGIALCQQLRANGCKTPILMLTA
RDTIQDRVKGLDAGADDYLIKPFDLEELSARIRALLRRGETALPPILTWGDLCVDPNTCEVTYQQQALNLSPKEYRLLEF
FLRHPRRMFSRSQLLDHLWAMDQIPEEATVKAHISSLRQKLKTAGLESDVIETVYGLGYRLKESP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 4e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cce_3378 YP_001804792.1 two-component response regulator NC_008702.1.4607594. Protein 1e-30 41
cce_3378 YP_001804792.1 two-component response regulator NC_002695.1.915041.p Protein 1e-21 41
cce_3378 YP_001804792.1 two-component response regulator BAC0533 Protein 5e-22 41
cce_3378 YP_001804792.1 two-component response regulator CP000034.1.gene3834. Protein 1e-21 41
cce_3378 YP_001804792.1 two-component response regulator CP000647.1.gene4257. Protein 5e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cce_3378 YP_001804792.1 two-component response regulator VFG1390 Protein 5e-40 45
cce_3378 YP_001804792.1 two-component response regulator VFG1702 Protein 1e-35 41