Gene Information

Name : hsdM1 (cur_0147)
Accession : YP_001799541.1
Strain : Corynebacterium urealyticum DSM 7109
Genome accession: NC_010545
Putative virulence/resistance : Unknown
Product : type I restriction-modification system, methyltransferase subunit
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG0286
EC number : -
Position : 175611 - 177197 bp
Length : 1587 bp
Strand : -
Note : -

DNA sequence :
ATGACTCCCACCCCAATCAAGGAATTCGAGGACACTCTATGGAAGGCCGCCGATAAACTGCGCGGTTCCATGGATGCCTC
TCAGTACAAGGACATCGTCCTCGGACTGGTGTTCCTCAAGTATGTGACCGATGCTTTCGACGCTCGCCGTCTCGAACTCC
TGGCGGAGCTGGAGGAGGAAGGCGCCACCGCGGAAGAGATCGCGGAGGAGCTGGAGGACCGCGACGCCTACCTGGAGAAG
AACGTTTTCTGGGTCGCTAAGGAGGCCCGCTGGGACTACCTGCAGCGCCACTCCAAGGGCAAGACAGATGACGCCGGCGG
TGAGTTCAAGTCCATCGGCAAGCTCATTGACGAGGCCGCGGAGGCCCTGATGACCGATAACCTCTCCCTGGAAGGCACGC
TGCCGCACAATTACAACAGCGATAGCGTGGACCAGCGCCGCCTGGGCGAGCTGGTGGACTTGTTCAGCACCACTCGCTTC
ACCGCGGAAGGCCCGGAGCGGGCACGTGACCTGCTGGGTGAGGTGTACGAATACTTCCTCGCGCGCTTCGCTTCGGCGGA
GGGTAAGCGCGGCGGCGAGTTCTACACCCCGCGCTCGGTGGTGCGCACGCTGGTGGAGATTCTCGAGCCGACCGAGGGCC
GTGTTTACGACCCGTGCTGTGGTTCTGGTGGCATGTTCGTCCAGGCGGAGAAGTTCCTGGACGCCCACGATAAGGACCCG
TCTGCGATTGCTATCTATGGCCAGGAGCTCAACGAGCGCACGTGGCGCTTGGCGCGGATGAACCTCGCTATTCACGCGTT
GAATTCGAAGGGCCTGGGCGAGCGCTGGGGCGATACTTTCGCCCGGGACATCCACCCCGGTGTGGAGATGGATTACGTGC
TGGCCAACCCACCGTTCAATATCAAGGACTGGGTGCGCAACACCGATGACAAGCGGTGGAGCTACGGTGTGCCGCCGGCG
AAGAACGCGAACTTCGGGTGGATGCAGCACATCATCTCCAAGCTCAGCGCTCAGGGCGAGGCTGGTGTGGTGATGGCTAA
TGGCACCATGACCTCAAATACCTCCGGTGAGGGTGAGATCCGCAAGAACATGCTTGAGGACGACATCGTCTCCTGCGTGG
TTACGCTGCCTGCTCAGCTGTTCCGGGGCACGCAGATCCCGGTGTGCGTCTGGTTCTTCGCCAAGGATAAGGGCGCTGGT
TCCAAGGGCTTCGTGGATCGTCGCGGGGAGTTCCTGCTGATCGATGCCCGCGAACTCGGCCACATGGTTGACCGCACGGA
GCGCACCTTCTCGGACGAGGACATCCAGAAAATCGCGAATACCTTCCGCACCTGGCGTGGCCGCTCGTCCGCTGAGGGCG
AGTACGAGGACGCCCCTGGTTACTGCAAGTCCGTCTCGCTGGACGAGATCCGCGAGGCTGATTACGCGCTCACTCCTGGC
CGCTATGTCGGTTTCGCGGAGGAGGAAGAGGACGGCGAGCCGATCGACGAGAAGATCGCACGACTCACCGCGGAGCTCAC
CGCAGCCCTGGACGAGTCCGCGCGCCTCAACGCCGTGGTCCGCGAGCAGCTGGGGAGGTTGGGCTAA

Protein sequence :
MTPTPIKEFEDTLWKAADKLRGSMDASQYKDIVLGLVFLKYVTDAFDARRLELLAELEEEGATAEEIAEELEDRDAYLEK
NVFWVAKEARWDYLQRHSKGKTDDAGGEFKSIGKLIDEAAEALMTDNLSLEGTLPHNYNSDSVDQRRLGELVDLFSTTRF
TAEGPERARDLLGEVYEYFLARFASAEGKRGGEFYTPRSVVRTLVEILEPTEGRVYDPCCGSGGMFVQAEKFLDAHDKDP
SAIAIYGQELNERTWRLARMNLAIHALNSKGLGERWGDTFARDIHPGVEMDYVLANPPFNIKDWVRNTDDKRWSYGVPPA
KNANFGWMQHIISKLSAQGEAGVVMANGTMTSNTSGEGEIRKNMLEDDIVSCVVTLPAQLFRGTQIPVCVWFFAKDKGAG
SKGFVDRRGEFLLIDARELGHMVDRTERTFSDEDIQKIANTFRTWRGRSSAEGEYEDAPGYCKSVSLDEIREADYALTPG
RYVGFAEEEEDGEPIDEKIARLTAELTAALDESARLNAVVREQLGRLG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hsdM YP_251979.1 type I restriction-modification system DNA methylase Not tested SCCmec Protein 3e-125 51
hsdM BAH57701.1 type I restriction-modification system DNA methylase Not tested Type-VII SCCmec Protein 3e-125 51
hsdM BAD24842.1 HsdM protein Not tested Type-V SCCmec Protein 1e-124 50
api49 CAF28523.1 putative HsdM-like N-methyl transferase Not tested YAPI Protein 4e-95 45