Gene Information

Name : ecpD (RALTA_B1807)
Accession : YP_002008446.1
Strain :
Genome accession: NC_010530
Putative virulence/resistance : Virulence
Product : periplasmic pilus chaperone
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 1953206 - 1953964 bp
Length : 759 bp
Strand : -
Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 8102362; Product type f : factor

DNA sequence : 
ATGAAGATCAAGTCCCTGATTTCCGCCGGCGTTGTTGCGCTGGGACTCTTGAGTGCAGTGTACGCGCAGGCCTCTGTGGT
CATCGCTGGTACGCGGGTCATCTATCGCGCTCAGGAGACCGAGACCACCATCAAGCTGACCAACGAAGGCAAGACGCCCG
CATTGACGCAGGTGTGGATCGACAAAGGCGATGCCAAGGCCGCGCCCGCAGCCATCGAGGTGCCGTTCACCGTCATGCCG
CCGGTGGCGCGCATCGACCCCGGCAAGGGCCAGACGCTGCGCATCCTTTACACCGGCGAGCCGCTGGCGCAGGACCGTGA
AACCGTGTTCTGGCTCAACGTGCTGGAGATCCCGCCCAAGCCAGGCCCGGACCAGGCCGATGCCAACAAGCTGCAGCTGG
CCTTTCGTTCCCGCATCAAGCTGTTCTTCCGCCCTGCGGGCCTGAAGGGCACGGCAGACGAAGCCCCGGGCATGATTCGC
TGGCGCATCGTCCAGTCGGGCGGCAAGCCTGCGCTGGAAGGCAGCAACCCGAGCGCGTATCACGTTTCATTCTCCAGGAT
CGAACTGGCCGCTGGCGGCAGGACCGCCCGCTATGAAGACGGCGGCATGATCGGGCCGGGCGAAACCAGGAGCTTCCCGC
TGACCGGCGAGGTGGCGCAGGGCCCCGACGCCAGGGTGCGCTTCAACACCATCAATGATTACGGCGGCTCCGCGCACGGC
GAAGCCGCGCTCGACGGCGGCAGCGCCCAGGCCCTTTAG

Protein sequence : 
MKIKSLISAGVVALGLLSAVYAQASVVIAGTRVIYRAQETETTIKLTNEGKTPALTQVWIDKGDAKAAPAAIEVPFTVMP
PVARIDPGKGQTLRILYTGEPLAQDRETVFWLNVLEIPPKPGPDQADANKLQLAFRSRIKLFFRPAGLKGTADEAPGMIR
WRIVQSGGKPALEGSNPSAYHVSFSRIELAAGGRTARYEDGGMIGPGETRSFPLTGEVAQGPDARVRFNTINDYGGSAHG
EAALDGGSAQAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ecpD1 AAO49832.1 pilin chaperone ecpD1 Not tested SPI-3 Protein 4e-51 45
unnamed CAD33727.1 putative F17-like fimbrial chaperone Virulence PAI I 536 Protein 2e-45 45
cupD2 AAP84170.1 putative pili assembly chaperone Not tested PAPI-1 Protein 5e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ecpD YP_002008446.1 periplasmic pilus chaperone VFG1468 Protein 1e-45 45
ecpD YP_002008446.1 periplasmic pilus chaperone VFG0007 Protein 5e-41 43