|
Name : RALTA_B1454 (RALTA_B1454) Accession : YP_002008106.1 Strain : Genome accession: NC_010530 Putative virulence/resistance : Resistance Product : cation ( cadmium)-transporting atpase (cadmium efflux atpase) Function : - COG functional category : P : Inorganic ion transport and metabolism COG ID : COG2217 EC number : - Position : 1566333 - 1568681 bp Length : 2349 bp Strand : - Note : Evidence 2b : Function of strongly homologous gene; PubMedId : 2524829; Product type t : transporter DNA sequence : ATGGCTCGCACGTCACCTGAAGACGCTCTTCCTCACGATCACGCCACCCGGCACGACGGGCCACATGGCGCCTGTCATGG GCATGATCACGCCCATGCCCATGCCCATGCCCATGCTCATGCTCCTGACCCGGCGCCTGCCGCGTGCTGCGGCGGCGGCT GCGCGTCCACCGTCGCGCTGACGGAGCGGGCACGGGTCGAGGTTCCTGCCGGCGCCAGCACCGCGGCCTGGCGCATCGAC GCCATGGACTGCCCGACCGAGGAAACGCTGATCCGCAACAAGCTGGGCGGCATGGCCGGCATCGCCGCGCTCGAATTCAA CCTGATCCAGCGCGTGCTGACGGTGCACCATACGCTGCCGTCGGCGGAGCCGGTGGCCAGGGCCATCGAAAGCCTGGGCA TGCGGCCGGTGCCGCTTGGCGCCGAAGCGGCGCAGCAAGTGCTGCCCGAAACCGCCGGACGCAAGCCGTGGTGGCCGCTG GCGATGGCCGGTGTCGCCGCGCTGGGGGCCGAGGCGACGGAATGGCTGGGCCTGGGTTTGCCGTGGCTGCCGGCGGTGCT GGCACTTGCCGCGGTCGCGCTGGGCGGGCTGATCACCTACCGCAAGGGCTGGATCGCGCTGCGCAACGCCAACCTGAACA TCAACGCGCTGATGAGCATCGCCGTCACCGGCGCGCTGCTGCTGCGCCAGTGGCCGGAAGCGGCGATGGTCATGGTGCTG TTCGCGCTGGCCGAGCGCATCGAGGCGACGTCGCTGGACCGGGCCCGCAATGCCATCCGCGGCCTGATGGCGATGGCGCC GGAACAAGCCACGGTGCGCCGCGCCGATGGCAGATGGGAGACCGTGCCGGCCGCCGGCGTGGCCGTCGGCACGCTGGTGC GCCTGCGCCCGGGCGAGCGCGTGGCCCTTGACGGCAAGGTCGTGCGCGGCCAGTCGGCGCTGGACCAGGCGCCCATCACC GGCGAAAGCGTGCCGGTCGACAAGGCCGAAGGGGATGCGCTATACGCGGGCTCGATCAACCAGTCCGGCGAGCTGGAGTA CACCGTGACCGCGCCGGCCAGCGATTCGACGCTGGCGCGCATCATCCACGCGGTGGAAGCCGCGCAGGGCAGCCGCGCGC CCACGCAGCGCTTTGTCGACCAGTTCGCGCGCATCTACACGCCCACGGTGTTCGCGATCGCGCTGGCGGTGGCAGTGGTG CCCCCGCTGGTGGCCGGCGGCGGCTGGGTGGACTGGATCTACAAGGCGCTGGTGCTGCTGGTGATCGCGTGCCCGTGCGC GCTGGTGATTTCCACCCCGGTCACCATCGTCAGCGGGCTGGCCGCGGCCGCGCGGCGCGGCATCCTGGTCAAGGGCGGGG TCTACCTGGAGCAGGGCCGCGAACTGGCCTGGGTGGCGCTGGACAAGACCGGCACCATCACGCACGGCAAGCCCGCGCAG ACCGACCATGCGCTGCTTGCCGACGATGTCCCGCACGCGCGCGCCATTGCCGCCAGCCTGGCGGCGCGCTCCGACCACCC GGTTTCGCGCGCGGTGGCCGCGGCGGCGCGGGCCGACGGGATCGACACGCTGCCGGTGGAGGCGTTCGAGGCGCTGGCGG GGCGCGGCACGCGCGGCACGGTGCAGGGCGTGGAATACCGGCTTGGCAACCACCGGCTGGTGCATGAGATGGGCGCGTGC TCGCCGGCGCTGGAAGCGCGGCTGGAAGCGCTGGAGCGCGAGGGCAAGACTGTGGTGCTGCTGGCGCGGGTCAATGACCA GGGCGCGGCCACGGCGCTGGCGCTGTTCGCGGTGGCCGACACCGTGCGCGACACCAGCCGCCAGGCGATTGCCGAACTGC ATGCGCTGGGCGTCAAGACGCTGATGCTGTCCGGCGATAACCCGCACACCGCGCAGGCGATCGCGGCGCAGGTCGGCATC GACGAAGCGCGCGGCAATCAGCTGCCGCAGGACAAGGCCGATGCCATTGCCGCGCTGGCCGGCGCGGCCCACGCCCGCGG CGGCCGCATCGGCATGGTCGGCGACGGCATCAACGACGCCCCGGCGCTGGCGCGTGCCGATGTCGGCTTCGCCATGGGCG CCGCAGGCACCGACACCGCCATCGAGACCGCCGACGTGGCGCTGATGGACGACGACCTGCGCAAGATCCCGGCGTTCGTG CGGCTGTCGCGCCGCACCGCCACCATCCTCAGGCAGAACATCGCGCTGGCGCTGGGCATCAAGGCGGTGTTCCTGGTGCT GACGGTGCTGGGGATGGGCACGATGTGGATGGCAGTGTTCGCCGACATGGGGGCGAGCCTGCTGGTGGTGTTCAACGGGC TGCGGGTGGGGGCGCGGCGCGGGGGGTGA Protein sequence : MARTSPEDALPHDHATRHDGPHGACHGHDHAHAHAHAHAHAPDPAPAACCGGGCASTVALTERARVEVPAGASTAAWRID AMDCPTEETLIRNKLGGMAGIAALEFNLIQRVLTVHHTLPSAEPVARAIESLGMRPVPLGAEAAQQVLPETAGRKPWWPL AMAGVAALGAEATEWLGLGLPWLPAVLALAAVALGGLITYRKGWIALRNANLNINALMSIAVTGALLLRQWPEAAMVMVL FALAERIEATSLDRARNAIRGLMAMAPEQATVRRADGRWETVPAAGVAVGTLVRLRPGERVALDGKVVRGQSALDQAPIT GESVPVDKAEGDALYAGSINQSGELEYTVTAPASDSTLARIIHAVEAAQGSRAPTQRFVDQFARIYTPTVFAIALAVAVV PPLVAGGGWVDWIYKALVLLVIACPCALVISTPVTIVSGLAAAARRGILVKGGVYLEQGRELAWVALDKTGTITHGKPAQ TDHALLADDVPHARAIAASLAARSDHPVSRAVAAAARADGIDTLPVEAFEALAGRGTRGTVQGVEYRLGNHRLVHEMGAC SPALEARLEALEREGKTVVLLARVNDQGAATALALFAVADTVRDTSRQAIAELHALGVKTLMLSGDNPHTAQAIAAQVGI DEARGNQLPQDKADAIAALAGAAHARGGRIGMVGDGINDAPALARADVGFAMGAAGTDTAIETADVALMDDDLRKIPAFV RLSRRTATILRQNIALALGIKAVFLVLTVLGMGTMWMAVFADMGASLLVVFNGLRVGARRGG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | BAB47609.1 | cadmium resistance protein B | Not tested | Type-III SCCmec | Protein | 1e-101 | 47 |
| cadA | BAC57487.1 | Probable cadmium-transporting ATPase (Cadmium efflux ATPase) | Not tested | Type-IIIinv SCCmec | Protein | 1e-101 | 47 |
| SE0075 | NP_763630.1 | cadmium resistance protein B | Not tested | SCCpbp4 | Protein | 8e-102 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| RALTA_B1454 | YP_002008106.1 | cation ( cadmium)-transporting atpase (cadmium efflux atpase) | BAC0298 | Protein | 1e-169 | 68 |
| RALTA_B1454 | YP_002008106.1 | cation ( cadmium)-transporting atpase (cadmium efflux atpase) | BAC0461 | Protein | 8e-73 | 42 |
