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Name : sctR (RALTA_B1264) Accession : YP_002007921.1 Strain : Genome accession: NC_010530 Putative virulence/resistance : Virulence Product : type III secretion system protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4790 EC number : - Position : 1356609 - 1357268 bp Length : 660 bp Strand : + Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response DNA sequence : ATGAACAGCGGACTCTACAATCCGGTCCTGATCCTGACCATCATCCTGACGTTCGGCATTGCGCCCTTCGTCGCGCTGAT GGTGACCAGCTACACCAAGCTGGTGATCGTGTTCGGCCTGCTGCGCGCCGCGCTGGGCCTGCAGCAGGTGCCGCCGAACA TGGTCCTGAACGGCATCGCCATCATCCTGACCGCCTACATCATGGCGCCGATCGGCTCCGATGCCTTCGACGCCATCAAG CGCCGCGCCGACGCCAACGCCGCCTTCAACGTCAACGACGTGGTCACCGTCTACGACGCGGTCAGCGGCCCACTCAAGGA ATTCCTGGTCAAGCACACCGAGGAGCGCAACCGCACCTTCTTCGTTCAGTCGGCCAAGCGCATCTGGCCCGAGGGCCGCG CCGACGACCTCAAGTCAGACGACATGATGGTGCTGATCCCCAGCTTCACGCTGTCCGAGCTGACCCGGGCGTTCCAGATC GGCTTCGTGGTCTACCTGGTATTCGTGGTGGTGGACCTGATCGTCGCCGCCATCCTGCTGGCGCTGGGCATGTCGATGGT GGCGCCGACCACGATCTCGGTGCCGTTCAAGCTGCTGCTGTTCGTGATGCTGGAGGGGTGGACGCAGCTGATCCAGGGGC TGGTGCTGTCGTATCGGTGA Protein sequence : MNSGLYNPVLILTIILTFGIAPFVALMVTSYTKLVIVFGLLRAALGLQQVPPNMVLNGIAIILTAYIMAPIGSDAFDAIK RRADANAAFNVNDVVTVYDAVSGPLKEFLVKHTEERNRTFFVQSAKRIWPEGRADDLKSDDMMVLIPSFTLSELTRAFQI GFVVYLVFVVVDLIVAAILLALGMSMVAPTTISVPFKLLLFVMLEGWTQLIQGLVLSYR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcR | AAP34349.1 | HrcR | Virulence | Hrp PAI | Protein | 6e-45 | 57 |
| hrcR | BAB07862.1 | HrcR | Virulence | Hrp PAI | Protein | 7e-45 | 56 |
| hrcR | NP_640757.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 1e-45 | 55 |
| hrcR | YP_362153.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 1e-45 | 55 |
| XC_3016 | YP_244084.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 2e-46 | 55 |
| hrcR | NP_636600.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 2e-46 | 55 |
| hrcR | AAD21321.1 | HrcR | Virulence | Hrp PAI | Protein | 9e-46 | 55 |
| hrcR | YP_198720.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 1e-45 | 54 |
| lscR | AAO18040.1 | LscR | Virulence | TTSS locus | Protein | 2e-37 | 51 |
| hrcR | AAT96303.1 | HrcR | Virulence | S-PAI | Protein | 6e-25 | 44 |
| hrcR | AAT96343.1 | HrcR | Virulence | S-PAI | Protein | 6e-25 | 44 |
| hrcR | AAT96262.1 | HrcR | Virulence | S-PAI | Protein | 6e-25 | 44 |
| unnamed | AAL06354.1 | EscR | Virulence | LEE | Protein | 5e-24 | 43 |
| spaP | AAS66865.1 | SpaP | Not tested | SSR-2 | Protein | 1e-26 | 42 |
| ssaR | NP_460384.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 1e-29 | 41 |
| ssaR | CAA68199.1 | secretion system apparatus, SsaR | Virulence | SPI-2 | Protein | 9e-30 | 41 |
| yscR | NP_456109.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 2e-29 | 41 |
| yscR | NP_805090.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 2e-29 | 41 |
| ssaR | YP_216427.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 1e-29 | 41 |
| YPO0270 | YP_002345352.1 | type III secretion system protein | Virulence | Not named | Protein | 4e-29 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| sctR | YP_002007921.1 | type III secretion system protein | VFG0044 | Protein | 3e-35 | 50 |
| sctR | YP_002007921.1 | type III secretion system protein | VFG0394 | Protein | 8e-37 | 50 |
| sctR | YP_002007921.1 | type III secretion system protein | VFG0188 | Protein | 3e-40 | 49 |
| sctR | YP_002007921.1 | type III secretion system protein | VFG0519 | Protein | 4e-30 | 41 |
| sctR | YP_002007921.1 | type III secretion system protein | VFG1012 | Protein | 5e-22 | 41 |
