Gene Information

Name : pRALTA_0138 (pRALTA_0138)
Accession : YP_001796031.1
Strain :
Genome accession: NC_010529
Putative virulence/resistance : Unknown
Product : transposase, IS6 family
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 120342 - 121661 bp
Length : 1320 bp
Strand : +
Note : Evidence 2b : Function of strongly homologous gene; Product type h : extrachromosomal origin

DNA sequence :
ATGACGACGGCGAACGCGTACCCGGACGACATCGAAGCGCTCAAAGCCCTCTTGCTGGAGCGCGATGCCCGCATCGGGCA
TCTGCAAGACGTGGTCGAATCGCAGAAGGCAGCGACGGCAACGGACAAGGCGGAGATCGAGCATCTCAAGTTGCTGATTG
CAAAGCTGCGCCGCATGCAGTTCGGCCGTCGCTCGGAGAAGCTGGACCGCCAGATCGAACAGCTCGAACTTCGCCTAGAA
GAACTCGAGGCCGACGAAGGTGCCGCACCCATCGAGATCCACAGGACGCCGCGTACGGCACCGGAACAGGTACAACGTAA
GCCGTTGCCAGAACACCTGCCGCGCGAGTTCCAGACTCATTGGCCCGAATCACGTGATACCTGCACGGCATGCGGTGCGC
CGATGAAGCAGCTTGGCGAGGATGTCTCCGAACAGCTCGAATATGTGCCAGCGAGCTTCCGGGTCATCCGGCATGTGCGA
CCCAAGCTGGCGTGTTCATGCTGCGATCACATCGCCCAGGCTGCTGCGCCGAGCCGCCCCATCGAGCGAGGCATGGCTGG
CCCGGGACTGCTGGCCCACGTGCTGGTCGCGAAGTTCGCGGATCACCTGCCGCTCTACCGACAGTCGGTGATCTATGCGC
GTGAAGGCGTCGAGCTGGATCGCTCGTTGCTGGCGAAGTGGGTTGGTCACAGTGCGGCGCTGCTGCAACCACTCGTCGAC
ACACTGCGTCGACACGTCATGGCGGCGACGAAGCTCCATGCCGACGATACGCCAGTGCCGGTGCTCGCGCCAGGCAATGG
CAAGACTAAAACTGGACGCTTGTGGGTGTATGTGCGTGACGACCGGACGTCGGGCGATGCTACTCCGCCGGCCGTCTGGT
TTGCCTATACGCCGGACCGCAAGGGCATCCACCCGCAGCAGCATCTTGAATCGTTCAACGGGACGTTGCAGGCCGATGCC
TACGGCGGCTACCAGGCGATCTACGAAACGGGACGGGTTGCCGAAGCAGCGTGCTGGGCCCATGCCCGGCGGCAGTTCTA
CGAATTGTATGCAGCTCGCCCCAATTCCTTGAATACCGAGGCCCTGGAACGCATCGGCGCGCTCTACAAGATCGAAGAGC
AGATCCGGGGCAAACCACCCGATGTGCGCCAGGCGTATCGACAGGCGCAAGCGCGTCCACTACTCGATCAACTCCACGCG
TGGCTGAGAGCCACGTTGGAGACGCTCTCGCGCAAATCTGACACGAGTCGAGCGATCCTGTACGGGGTAGTCGTCCTTTT
CGTGCAAAATCTTACGGTTTCCTCCAGATTTTCCTTGTGA

Protein sequence :
MTTANAYPDDIEALKALLLERDARIGHLQDVVESQKAATATDKAEIEHLKLLIAKLRRMQFGRRSEKLDRQIEQLELRLE
ELEADEGAAPIEIHRTPRTAPEQVQRKPLPEHLPREFQTHWPESRDTCTACGAPMKQLGEDVSEQLEYVPASFRVIRHVR
PKLACSCCDHIAQAAAPSRPIERGMAGPGLLAHVLVAKFADHLPLYRQSVIYAREGVELDRSLLAKWVGHSAALLQPLVD
TLRRHVMAATKLHADDTPVPVLAPGNGKTKTGRLWVYVRDDRTSGDATPPAVWFAYTPDRKGIHPQQHLESFNGTLQADA
YGGYQAIYETGRVAEAACWAHARRQFYELYAARPNSLNTEALERIGALYKIEEQIRGKPPDVRQAYRQAQARPLLDQLHA
WLRATLETLSRKSDTSRAILYGVVVLFVQNLTVSSRFSL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 4e-114 64
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 5e-90 56
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 1e-84 53
l0015 CAD33775.1 L0015 protein Not tested PAI I 536 Protein 6e-83 51
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 3e-97 51
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 9e-85 51
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 7e-98 51
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 6e-97 51
tnp AEA34686.1 transposase Not tested Not named Protein 7e-99 51
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 1e-97 51
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 1e-97 51
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 1e-97 51
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 9e-98 51
unnamed AAC31494.1 L0015 Not tested LEE Protein 8e-98 51
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 6e-97 51
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 6e-95 51
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 6e-97 51
unnamed AAL57570.1 unknown Not tested LEE Protein 1e-97 51
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 6e-88 51
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 6e-88 51
unnamed AAL08460.1 unknown Not tested SRL Protein 1e-94 50
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 4e-97 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pRALTA_0138 YP_001796031.1 transposase, IS6 family VFG1513 Protein 3e-90 56
pRALTA_0138 YP_001796031.1 transposase, IS6 family VFG1516 Protein 4e-83 51
pRALTA_0138 YP_001796031.1 transposase, IS6 family VFG0793 Protein 5e-98 51
pRALTA_0138 YP_001796031.1 transposase, IS6 family VFG1051 Protein 6e-95 50
pRALTA_0138 YP_001796031.1 transposase, IS6 family VFG1736 Protein 5e-83 50