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Name : Lcho_0550 (Lcho_0550) Accession : YP_001789590.1 Strain : Leptothrix cholodnii SP-6 Genome accession: NC_010524 Putative virulence/resistance : Virulence Product : type IV-A pilus assembly ATPase PilB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 595435 - 597159 bp Length : 1725 bp Strand : - Note : KEGG: mpt:Mpe_A0509 pilus biogenesis ATPase; TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase DNA sequence : GTGGCCGCTGAAACACTGTCCGACGCCCCGCAAAGCACCCTCTCCGGGGTGGCCCGCGTGCTGGTGCACGCCGGCAAGCT GAACGCCCGCGCGGCCGAAGAACTCGCCCGCCTCGCACGTGATCAGCGCCGCAACTTCGTCGCCGCCGCGGTCGGCGCCA ATCTGCTGAGTTCGGCCGATCTGGCCCACACGCTGTCGCACGCGCTGGCCGTGCCGCTGCTCGACCTCGACGCGGTCGAC GTCAGCAAGCTGCCGCAGAACCTGGTCGACGCGCGCACGCTGTCGCAGTATCAGGTGCTGGTGCTGGGCAAACGCGGCAA CCGGCTGTTCATCGGCGGCGCCGACCCGACCGACCAGGAAGCGGTCGACCGCATCAAGTTCGCCACCCAGCTGACGCCCG AGTGGGTGATCGTCGAATACGACAAGCTGGCCAAGATCGTCGAGGCCAAGAGCACCTCGGCGACCGAGGCGCTCGAATCG ATCGTCGCCGGCGATTTCGAGTTCGACGTCGAAGAGCAGGATCCGAACGCCAAGCCCGACGAGGAGGTCACCACCGACGT CGAGGACGCGCCGGTGGTGCGCTTCCTGCAGAAGATGCTGATCGACGCGATCAACATGCGGGCGTCGGACCTGCACTTCG AGCCCTACGAGCAGACCTACCGGGTGCGCTTTCGCATCGACGGCGAGCTGCGCGAGATCACCCAGCCGCCGGTGGCGATC AAGGACAAGCTGGCCTCGCGCATCAAGGTCATCAGCCGCCTGGACATCGCCGAAAAACGCGTGCCGCAGGACGGCCGCAT GAAGCTGAAGTTCGGCAACAAGGCAATCGACTTCCGCATCAGCACGCTGCCGACGCTGTTCGGCGAGAAGATCGTGATCC GGATCCTCGACCCGTCGTCGGCCAAGCTGGGCGTCGAGGCGCTCGGTTACGAGCGCGAGGAGAAGGATCGGCTGCTGTCG GCCATCAAGCGGCCGTACGGGATGATCCTGGTCACCGGCCCGACCGGCTCGGGCAAGACGGTGTCGCTCTACACCTGCCT GAACATCCTGAACCAGCCCGGCGTCAACATCTCGACCGTCGAGGATCCGGCCGAAATCAACCTGCCCGGCATCAACCAGG TCAACGTCAACGACAAGGCGGGCATGAACTTCGCCGTCGCGCTGCGCGCCTTCCTGCGCCAGGATCCGGACGTGATCATG GTCGGCGAGATCCGCGACATCGAGACCGCCGACATCGCGATCAAGGCCGCCCAGACCGGCCACCTGGTGCTGTCGACGCT GCACACCAACGATGCCCCGACCACGCTGACGCGGCTGCTCAACATGGGCGTGCCGCCGTTCAACATCGCCTCGAGCATCA TCCTGATCTCGGCCCAGCGACTGTGCCGACGCCTGTGCGAGAACTGCAAGGCTCCGGCCGAATACCCGCGCGAGGCGCTG CTGCGCGCCGGCTTCAAGCCCGACGAGGTCGACGGCTCCTGGAAACCCTACAAGGCGGTCGGCTGCTCGGCCTGCAACAA CGGCTACCGCGGGCGGGTCGGCGTCTATCAGGTGATGCCGATCACCGAGGCGATCCAGCGCGTCATCCTCGCCGAAGGCA CCGCGCTCGACATCGCCGAGCAGGCCGCCCGCGACGGCGTGCGCGATCTGCGGCTGTCGGGTCTGGTTAAAGTGCGGGCG GGCGCCACCACGCTCGAAGAAGTGATTTCCGTGACCAACCAATGA Protein sequence : MAAETLSDAPQSTLSGVARVLVHAGKLNARAAEELARLARDQRRNFVAAAVGANLLSSADLAHTLSHALAVPLLDLDAVD VSKLPQNLVDARTLSQYQVLVLGKRGNRLFIGGADPTDQEAVDRIKFATQLTPEWVIVEYDKLAKIVEAKSTSATEALES IVAGDFEFDVEEQDPNAKPDEEVTTDVEDAPVVRFLQKMLIDAINMRASDLHFEPYEQTYRVRFRIDGELREITQPPVAI KDKLASRIKVISRLDIAEKRVPQDGRMKLKFGNKAIDFRISTLPTLFGEKIVIRILDPSSAKLGVEALGYEREEKDRLLS AIKRPYGMILVTGPTGSGKTVSLYTCLNILNQPGVNISTVEDPAEINLPGINQVNVNDKAGMNFAVALRAFLRQDPDVIM VGEIRDIETADIAIKAAQTGHLVLSTLHTNDAPTTLTRLLNMGVPPFNIASSIILISAQRLCRRLCENCKAPAEYPREAL LRAGFKPDEVDGSWKPYKAVGCSACNNGYRGRVGVYQVMPITEAIQRVILAEGTALDIAEQAARDGVRDLRLSGLVKVRA GATTLEEVISVTNQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-81 | 44 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-81 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Lcho_0550 | YP_001789590.1 | type IV-A pilus assembly ATPase PilB | VFG0233 | Protein | 7e-131 | 57 |
| Lcho_0550 | YP_001789590.1 | type IV-A pilus assembly ATPase PilB | VFG0112 | Protein | 1e-141 | 53 |
| Lcho_0550 | YP_001789590.1 | type IV-A pilus assembly ATPase PilB | VFG1880 | Protein | 7e-126 | 51 |
| Lcho_0550 | YP_001789590.1 | type IV-A pilus assembly ATPase PilB | VFG1876 | Protein | 7e-82 | 45 |
| Lcho_0550 | YP_001789590.1 | type IV-A pilus assembly ATPase PilB | VFG0182 | Protein | 3e-83 | 45 |
| Lcho_0550 | YP_001789590.1 | type IV-A pilus assembly ATPase PilB | VFG2048 | Protein | 3e-81 | 44 |
