Gene Information

Name : Lcho_0498 (Lcho_0498)
Accession : YP_001789538.1
Strain : Leptothrix cholodnii SP-6
Genome accession: NC_010524
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 539365 - 540036 bp
Length : 672 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mpt:Mpe_A0076 response regulator transcription regulatory protein

DNA sequence : 
ATGCGCATCCTGATCGCCGAAGATGACCAGGTCCTGGCCGATGGTTTGCTGCGCAGCCTGCGCAGCGCCGGTTATGCGGT
CGACCATGTCGGTTCCGGTTCGGAGGCCGACGCGGCGCTGGCCGCCCACGAGTTCGACATGCTGATCCTGGACCTGGGCC
TGCCCAAGCTGCACGGCCTGGAGGTGCTCAAGAAACTGCGCGGGCGCGGCTCGTCGGTGCCGGTGCTGATCCTGACCGCC
GCCGACAGCATCGAGCAGCGCGTCAAGGGCCTCGATTTCGGCGCCGACGACTACATGGCCAAGCCGTTCTCGCTGCAGGA
GCTCGAGGCGCGCGTGCGTGCGCTGACGCGCCGCGGCCTCGGTTCGGCCAGCGCGATCATCCGCCACGGCCCGCTGAGCT
TCGACGCCACCGGCCGGGTGGCCTACATCAACGACCTGATGATCGACCTGTCGGCGCGCGAGCTGAGCCTGCTCGAGGTG
CTGCTGCAGCGCGCCGGCCGGCTGGTCAGCAAGGACCAGCTGGTCGAGCGTCTGTGCGAGTGGGGCGAAGAGGTCAGCAA
CAACGCGATCGAGGTCTACATCCACCGTCTGCGCAAGAAGATCGAACAGGGACCGATCCGCATCGCCACCGTGCGCGGCC
TCGGCTATTGCCTTGAAAAGATCCCGGGCTGA

Protein sequence : 
MRILIAEDDQVLADGLLRSLRSAGYAVDHVGSGSEADAALAAHEFDMLILDLGLPKLHGLEVLKKLRGRGSSVPVLILTA
ADSIEQRVKGLDFGADDYMAKPFSLQELEARVRALTRRGLGSASAIIRHGPLSFDATGRVAYINDLMIDLSARELSLLEV
LLQRAGRLVSKDQLVERLCEWGEEVSNNAIEVYIHRLRKKIEQGPIRIATVRGLGYCLEKIPG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-40 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lcho_0498 YP_001789538.1 two component transcriptional regulator BAC0487 Protein 4e-37 44
Lcho_0498 YP_001789538.1 two component transcriptional regulator BAC0083 Protein 8e-35 43
Lcho_0498 YP_001789538.1 two component transcriptional regulator BAC0638 Protein 2e-28 43
Lcho_0498 YP_001789538.1 two component transcriptional regulator CP001918.1.gene2526. Protein 6e-29 41
Lcho_0498 YP_001789538.1 two component transcriptional regulator CP000034.1.gene2022. Protein 3e-29 41
Lcho_0498 YP_001789538.1 two component transcriptional regulator NC_002695.1.913289.p Protein 4e-28 41
Lcho_0498 YP_001789538.1 two component transcriptional regulator CP000647.1.gene1136. Protein 2e-28 41
Lcho_0498 YP_001789538.1 two component transcriptional regulator NC_002516.2.879194.p Protein 1e-31 41
Lcho_0498 YP_001789538.1 two component transcriptional regulator BAC0530 Protein 3e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lcho_0498 YP_001789538.1 two component transcriptional regulator VFG1390 Protein 1e-34 43
Lcho_0498 YP_001789538.1 two component transcriptional regulator VFG0473 Protein 3e-39 41
Lcho_0498 YP_001789538.1 two component transcriptional regulator VFG1389 Protein 2e-29 41