Gene Information

Name : Lcho_4270 (Lcho_4270)
Accession : YP_001793286.1
Strain : Leptothrix cholodnii SP-6
Genome accession: NC_010524
Putative virulence/resistance : Unknown
Product : short-chain dehydrogenase/reductase SDR
Function : -
COG functional category : I : Lipid transport and metabolism
COG ID : COG1028
EC number : -
Position : 4778928 - 4779677 bp
Length : 750 bp
Strand : +
Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dac:Daci_0732 short-chain dehydrogenase/reductase SDR

DNA sequence : 
ATGCTGCTCAAAGACAAGGTTGCCGTCATCACCGGTGGTGCCGGCCTCAACGGCCTCGGCTTTGCCACCGCGCGCCTGAT
GGCGGCGCAGGGCGCCCGCGTCGTGGTGCTCGACCTGGCCGGCGCCGAGCCGGCCGCAGCGGCGGCGCAACTCGGCGCCG
GCCACCTCGGCTGGGTGGCCGACGTGACCGACAAGGCCTCGTGCGACGCCGCCGCGGCCGCCGTGCTGCAGGCCTACGGC
CGCATCGACGTGCTGGTCAACAACGCCGGCATCACGCAACCGGCCAAGACGCTCGACATCACCGGCGCCGACTACGACCG
CATCCTCGACGTCAGCCTGCGCGGCACGCTGTACATGTCGCAGGCCGTGCTGCCGGCCATGCAGCAGCAGAAGAGCGGCT
CGATCGTCTGCATCTCGTCGGTCTCGGCGCAGCGCGGCGGCGGCATCCTCGGCGGACCGCACTACTCGGCCGCCAAGGCC
GGCGTGCTGGGCCTGGCGCGCGCCATGGCGCGCGAGTTCGGCCCCGACGGCATCCGCATCAACTGCATCACGCCCGGCCT
GATCGGCACCGACATCATCAAGGGCAAGCTCACCGAAGAGAAGAAGGCCGAGATCGCCGAGACGATCCCTCTCGCCCGCC
TGGGCCGTGCCGACGACATCGGCGGCGCCTGCGTCTTTCTGGCCAGCGACCTCTCGCTCTATTGCACCGGCATCACGCTC
GACGTGAACGGCGGCATGCTGATCCATTGA

Protein sequence : 
MLLKDKVAVITGGAGLNGLGFATARLMAAQGARVVVLDLAGAEPAAAAAQLGAGHLGWVADVTDKASCDAAAAAVLQAYG
RIDVLVNNAGITQPAKTLDITGADYDRILDVSLRGTLYMSQAVLPAMQQQKSGSIVCISSVSAQRGGGILGGPHYSAAKA
GVLGLARAMAREFGPDGIRINCITPGLIGTDIIKGKLTEEKKAEIAETIPLARLGRADDIGGACVFLASDLSLYCTGITL
DVNGGMLIH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAT96175.1 putative short-chain type regulator Not tested T-PAI Protein 1e-64 67
unnamed AAT96098.1 putative short-chain type regulator dehydrogenase Not tested T-PAI Protein 1e-64 67
unnamed AAT96115.1 putative short-chain type regulator Not tested T-PAI Protein 3e-65 67
unnamed AAT96227.1 putative short-chain type regulator Not tested T-PAI Protein 1e-64 66
unnamed AAT96054.1 putative short-chain type regulator Not tested T-PAI Protein 6e-65 66