Gene Information

Name : Lcho_4268 (Lcho_4268)
Accession : YP_001793284.1
Strain : Leptothrix cholodnii SP-6
Genome accession: NC_010524
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 4777083 - 4777799 bp
Length : 717 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A2067 ABC-type anti-microbial peptide transporter, ATP-binding protein

DNA sequence : 
ATGCCGCCCGACGCACCGATCGTCTTTCGCGCCCGCGACCTCGCCAAGGTCTACGGAAGCGGCGAGGTCGAGGTGATCGC
GCTGCACGACGTCTCGCTGGAGATCGCGCGCGGCGAGTTCGTGGTGCTGCTGGGCGCCTCGGGCAGCGGCAAGAGCACGC
TGCTCAACATCCTCGGCGGGCTCGACGTGCCCACGCGCGGCGAGGTCAGCTTCGGCGATCACCTCTTGAGCGGCGCCAGC
GAGGCCGAGCTGACACGCTACCGGCGCGAGCACGTCGGCTTCGTGTTCCAGTTCTACAACCTGATCCCGAGCCTGACGGT
GCGCGAGAACGTCGCGCTCGTGACCGACATCGCCGCGCACCCGATGGACATCGACGAGGCCATCGCATTGGTCGACCTGA
GCGCGCGGCGCGACCACTTTCCGGCGCAGCTGTCGGGCGGCGAGCAGCAGCGCGTGGCGATCGCGCGTGCCATCGTCAAG
AAGCCCGACGTGCTGCTGTGCGACGAGCCCACCGGCGCGCTCGACTACAGCACCGGCAAGCGCGTGCTCGACGTCATCGC
GCGCATCAACCGCGAGCTGGGCACCACCGCGGTGGTGATCACGCACAACGCGGCCATCGCCGGCATGGCCGACCGCGTGA
TCTACCTCGGCGACGGCCACATCCTGCGGGTCGAACGCAACGCGCACAAGGTGTCGCCGGCCGAGTTGAGCTGGTGA

Protein sequence : 
MPPDAPIVFRARDLAKVYGSGEVEVIALHDVSLEIARGEFVVLLGASGSGKSTLLNILGGLDVPTRGEVSFGDHLLSGAS
EAELTRYRREHVGFVFQFYNLIPSLTVRENVALVTDIAAHPMDIDEAIALVDLSARRDHFPAQLSGGEQQRVAIARAIVK
KPDVLLCDEPTGALDYSTGKRVLDVIARINRELGTTAVVITHNAAIAGMADRVIYLGDGHILRVERNAHKVSPAELSW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-35 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-35 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-35 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-35 43
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-28 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lcho_4268 YP_001793284.1 ABC transporter-like protein NC_012469.1.7685735. Protein 7e-52 51
Lcho_4268 YP_001793284.1 ABC transporter-like protein NC_008702.1.4606598. Protein 1e-30 45
Lcho_4268 YP_001793284.1 ABC transporter-like protein CP001581.1.gene798.p Protein 8e-40 44
Lcho_4268 YP_001793284.1 ABC transporter-like protein CP001581.1.gene598.p Protein 4e-40 43
Lcho_4268 YP_001793284.1 ABC transporter-like protein NC_012469.1.7686946. Protein 4e-21 41
Lcho_4268 YP_001793284.1 ABC transporter-like protein NC_012469.1.7686878. Protein 1e-35 41