Gene Information

Name : Lcho_0415 (Lcho_0415)
Accession : YP_001789455.1
Strain : Leptothrix cholodnii SP-6
Genome accession: NC_010524
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 456233 - 457513 bp
Length : 1281 bp
Strand : +
Note : TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_4500 TRAP dicarboxylate transporter-DctM subunit

DNA sequence : 
ATGACCGTATTCATCTTCCTCGGCTCGCTGCTGGCGGCCATGGCCATCGGCCTGCCGATCGCCTATTCGCTGCTGCTGTC
GGGCGTGGCCCTGATGTGGCACCTCGACCTGTTCGACGCCCAGATCCTGGCGCAGAACGTCATCAACGGCGCCGACTCCT
TCCCGCTGCTGGCGGTGCCCTTCTTCATGCTGGCCGGCGAGATCATGAACGTCGGCGGCCTGTCGCGTCGCATCGTCAAC
CTGGCGTTGACGCTGGTGGGCCACAAGCGTGGCGGCCTGGGCTTCGTGGCCATCGTGGCGGCCTGCCTGCTGGCGGCGCT
GTCGGGTTCGGCGGTGGCCGACACCGCCGCGCTGGCCGCGCTGCTGCTGCCGATGATGGTGCGAGCCGGGCATGACAAGG
CCCGCGCGGGCGGCCTGATCGCCAGCGCCGGCATCATCGCGCCGATCATCCCGCCGTCGATCGGCTTCGTGATCTTCGGC
GTGGCGGCCAACGTGTCGATCAGCAAGCTGTTCCTGGCGGGCATCGTGCCGGGGCTGCTGATGGGCCTGAGCATCGCGGT
GACGTGGTATTTCGTCTCCAAGAAGGAGAACATCACGCCCCCGCCCAAGGCGAGCTGGGCCGAGCGCATCGTGGCGCTGC
GCCAGGCGACCTGGGCGCTGGTGCTGCCGGTGATCGTGATCGTGGGCCTGAAGTTCGGCGTCTTCACGCCGACCGAGGCG
GCGGTGGTGGCGGCGGTCTACGCGCTGTTCGTCTCGACCGTGATCTACGGCGAGCTCAAGCTGCACCAGCTGCACGAGGT
GTTCGTCAGCGCCGCCAAGACCACCGCGGTGATCATGTTCCTGGTGGCCGCGGCAATGGTCAGCGCCTGGCTGATCACGG
TGGCCGACATCCCGAGCAAGATGATCACGCTGCTCGAGCCGTTCATGGACAACCAGACGCTGCTGCTGCTGGCGATCATG
TTCCTGGTGATCGCGGTGGGCACGGCGATGGACATGACGCCGACCATCCTGATCATGACCCCGGTGCTGATGCCGGTGAT
CAAGGCCGCGGGCATCGACCCGGTGTACTTCGGCGTGCTGTTCATCATGAACAACGCCATCGGGCTGATCACGCCGCCGG
TGGGCACGGTGCTCAACGTGGTGGCCGGGGTGGGCAAGATGAAGATGGACGAGGTGACCAAGGGCGTCATGCCGTTCATG
CTGGCCCAGTTCTTCGTCATGTTCATGCTGGTGTTCTTCCCCTCGATCGTCACGGTGCCGGCCAAGTGGCTGGCCAACTG
A

Protein sequence : 
MTVFIFLGSLLAAMAIGLPIAYSLLLSGVALMWHLDLFDAQILAQNVINGADSFPLLAVPFFMLAGEIMNVGGLSRRIVN
LALTLVGHKRGGLGFVAIVAACLLAALSGSAVADTAALAALLLPMMVRAGHDKARAGGLIASAGIIAPIIPPSIGFVIFG
VAANVSISKLFLAGIVPGLLMGLSIAVTWYFVSKKENITPPPKASWAERIVALRQATWALVLPVIVIVGLKFGVFTPTEA
AVVAAVYALFVSTVIYGELKLHQLHEVFVSAAKTTAVIMFLVAAAMVSAWLITVADIPSKMITLLEPFMDNQTLLLLAIM
FLVIAVGTAMDMTPTILIMTPVLMPVIKAAGIDPVYFGVLFIMNNAIGLITPPVGTVLNVVAGVGKMKMDEVTKGVMPFM
LAQFFVMFMLVFFPSIVTVPAKWLAN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 6e-41 41
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 6e-41 41
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 5e-41 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lcho_0415 YP_001789455.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 3e-41 41