Gene Information

Name : Lcho_4091 (Lcho_4091)
Accession : YP_001793108.1
Strain : Leptothrix cholodnii SP-6
Genome accession: NC_010524
Putative virulence/resistance : Virulence
Product : type VI secretion protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3516
EC number : -
Position : 4587063 - 4587569 bp
Length : 507 bp
Strand : -
Note : TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: azo:azo3895 putative cytoplasmic protein,SciH

DNA sequence :

ATGGCCACCAGCAGCCAGAAATTCATCGCCCGCAATCGCGCCCCGCGGGTGCAGATCGAATACGACGTCGAGACCTACGG
CGCCGAGAAGAAGGTGCAGGTGCCGTTCGTGATGGGCGTGCTGGCCGACCTGAGCGGCAAGCCGGCCGAGCCGCTGGCGC
CGGTGGCGGATCGCAAGTTCCTCGAGATCGACGTCGACAACTTCAACTCGCGCATGAAGTCGATGAAGCCGCGGGTGGCC
TTCCAGGTCGCCAACGAGCTGACCGGCGAGGGCAACCTGGCGGTCGACATCAGCTTCGAGACGCTCGACGACTTCTCGCC
CGCGGCGGTGGCGCGCAAGGTCGAGGGGCTGCGCCAGCTGCTCGAGGCGCGCCAGCAGCTGTCGAACCTGATCACCTACA
TGGACGGCAAGACCGGCGCCGAGGAGCTGCTGGCCAAGGTCATCAAGGACCAGGCGCTGCTGCAGTCGCTGACCCAGGCG
GCCAAGCCGGCCGGCACCCCCGAATGA

Protein sequence :

MATSSQKFIARNRAPRVQIEYDVETYGAEKKVQVPFVMGVLADLSGKPAEPLAPVADRKFLEIDVDNFNSRMKSMKPRVA
FQVANELTGEGNLAVDISFETLDDFSPAAVARKVEGLRQLLEARQQLSNLITYMDGKTGAEELLAKVIKDQALLQSLTQA
AKPAGTPE

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
STY0297	NP_454879.1	conserved hypothetical protein	Not tested	SPI-6	Protein	4e-57	67

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Lcho_4091	YP_001793108.1	type VI secretion protein	VFG2069	Protein	4e-61	79