Gene Information

Name : Lcho_4089 (Lcho_4089)
Accession : YP_001793106.1
Strain : Leptothrix cholodnii SP-6
Genome accession: NC_010524
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3157
EC number : -
Position : 4584916 - 4585401 bp
Length : 486 bp
Strand : -
Note : PFAM: protein of unknown function DUF796; KEGG: azo:azo3897 putative cytoplasmic protein,SciM

DNA sequence :

ATGGCTGTAGACATGTTCATCAAGATCGGCGACATCAAGGGCGAGTCGAAAGACGACGCGCACAAGACCGAAATCGACGT
GCTGGCCTGGAGCTGGGGCCTGAGCCAGAGCGGCTCGGCGCACATGGGCGGTGGCGCGGGTGCGGGCAAGGTCAGCGTGC
AGGACATCTCGCTGACCAAGTACGTCGATTCGTCGTCCACCGCGCTGATCGTGGCGGCCTGCAAGGGCACCCACATCAAG
CAGGCCACGCTGACCGTGCGCAAGGCCGGCGACACGCCGCTCGAATACATCAAGATCACGCTCGACGAGGTGATGGTGTC
GTCGCTGTCGACCGGCGGCAGCGGTGGCGAGGACCGCCTGACCGAGAACGTCACGCTGAACTTCGCCAAGTTCAAGGTCG
AATACACCATCCAGGCCGACACCGGCGGCAAGGGCACCACCAGCACAGCGGCCTGGGACATCCCGGCCAACAAGCCGGTG
GGCTGA

Protein sequence :

MAVDMFIKIGDIKGESKDDAHKTEIDVLAWSWGLSQSGSAHMGGGAGAGKVSVQDISLTKYVDSSSTALIVAACKGTHIK
QATLTVRKAGDTPLEYIKITLDEVMVSSLSTGGSGGEDRLTENVTLNFAKFKVEYTIQADTGGKGTTSTAAWDIPANKPV
G

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
STY0302	NP_454882.1	conserved hypothetical protein	Not tested	SPI-6	Protein	1e-26	46

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Lcho_4089	YP_001793106.1	hypothetical protein	VFG2071	Protein	5e-31	65