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Name : Lcho_4086 (Lcho_4086) Accession : YP_001793103.1 Strain : Leptothrix cholodnii SP-6 Genome accession: NC_010524 Putative virulence/resistance : Virulence Product : type VI secretion protein Function : - COG functional category : S : Function unknown COG ID : COG3519 EC number : - Position : 4581857 - 4583773 bp Length : 1917 bp Strand : - Note : TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: azo:azo3901 putative cytoplasmic protein, SciC DNA sequence : ATGAGCCGCGGCCTCGATCCCGGCCTGCTGCGCCACTACAACGAGGAGCTCGCCTACCTGCGCGAGATGGGGCTGGAGTT CTCGCGCCAGTTCCCGAAGATCGCCGCCCGGCTCGGCATGGACGGGCTCGAGGTGGCCGACCCCTACGTCGAACGCCTGC TCGAAGGTTTCGCCTTCATGAGCGCGCGGGTGCAGTTGAAGCTCGACGCCGAGTACCCGCGCTTCATCGGCCACCTGCTC GAAAGCGTCTATCCGAACGCGCTGGCGCCGGTGCCGTCGATGGCGGTGATGCGGCTGCAGCCCGATCTGGCCGACCCGGC GCTGGCTCGCGGCGCGCCGGTGCCACGGGGCAGCGCGCTGCATGCCGATCAGCTGCGCAGCCAGAACACGCGCTGCGAGT TCCGCACCGCGCATGCGCTGCGGCTGTGGCCGATCGAGATCGCATCGGTGCAGTACTTCAGCCACGCCGGCGAGCTGCCG GTGGCGCGCCTGCCCGAGCTGCGGCAGGCGGCCGGCGGCCTGCGCATCCGCCTGCGGGCGCACGGCGGGCTGCGCTTCGA CCAGCTGCCGATCGACTCGCTGGTGTTCTACCTGGCCGCGCCCGACGAGGTCGCGTACCGGCTGCACGCGCTGATTTTCG GTGCCGGGCTGGGCAGCTGGCTGGCTGCGCCGGCCGCCAACGCCCCGGTCCCTGGCAGCGCCGCGCGCCCGGTCGACCCC GGCCCGGCCGGCGCCGGGTGGCGCGGCGCCGATTCGCTGCAGCCCCTCGGTCATTCGGATGACGAGGCGCTGCTGCCCGT CACCGCGCGCGGCTTCTCCGGCCACCGGCTGGTGCAGGAGCTGGCCGCGCTGCCGCAGCGGTTCCTGTTCGTCGAGGTGG CCGAGCTGCGCGCGCGGCTGGCCCGGCTGGCGGTCACCGAGGTCGACCTGTTCCTGCCCTTCAGCCGCGGCGAACCGGGC CTGGAGGCGCTGGTCGACGCCAGCAGCCTGGCGCTCAACTGCACGCCGGCGATCAACCTGTTCGGCAAGCGCCTCGACCG CATCCAGACCAGCGTGTCGAACTGGGAATACCACGTCGTGCCCGACCGCACACGCCCGCTCGACTACGAGCTGCACAGCC TGGCGAGCGTCGTCGGCCACGGCACCGGCCGGGTCGCCGAGCAGGCCTTCGCGCCGCTCTACACCGCCTGCCACGACGAG GGCCCGGAGCAGCTCGCCTACTACAGCCTGCGCCGCGAGGTGCGCCTGCCGTCGACGCGCCAGCAGGAGCAGGGTGCGCG CTCGTCCTACCTCGGCAGCGAGGTGTTCGTGTCGCTGGTCGACCCGCACAACCTGCCGTATGCCGAAGATGTGCGCCAGC TCTCGCTCACCGGTCTGGTCAGCAACCGCGACCTGCCGATGCTGCTGTCGGGCAGCGGCTGGACGCTCGACCTGCCCGGC CCCGTGCGCGGCGCCACCTGCCTGCGCGGGCCGACCGCACCGCACGCCCGCCTGCCACGCGGCGACATCGGCTGGCAGCT CATCAGCCAGCTCACGCTCAATCACCTGAGCATCGCGGGCGAGGATCCGCAACGCGCCGCCGCATCGCTGCGCAGCCTGC TGATCCACCACGGCTCGGCCGACGACGCCGGCTGGCGCAAGCAGGTCGAGGGCCTGCGCGCGGTCTCGGCGCAGCCGGTG ACGCGGCGCCTGCCGATGCCCGGGCCGCTGGCCTACGGGCTGGGCGTGGCGATCGACGTGACGGTCGACGAGCTCGCCTT CCAGGGCGGCAGCGCCTTCCTGATGGGCTGCGTGCTGGAGCGTTTCCTGGCCCGCCAGGCGTCGATCAACAGCTTCACGC AATTGCGGCTGATCGCGCCCGGGCGCGGCACGCTGATGACCTGGCCGCCGCGCGTGGGCAGCGCCGCGGTGATCTGA Protein sequence : MSRGLDPGLLRHYNEELAYLREMGLEFSRQFPKIAARLGMDGLEVADPYVERLLEGFAFMSARVQLKLDAEYPRFIGHLL ESVYPNALAPVPSMAVMRLQPDLADPALARGAPVPRGSALHADQLRSQNTRCEFRTAHALRLWPIEIASVQYFSHAGELP VARLPELRQAAGGLRIRLRAHGGLRFDQLPIDSLVFYLAAPDEVAYRLHALIFGAGLGSWLAAPAANAPVPGSAARPVDP GPAGAGWRGADSLQPLGHSDDEALLPVTARGFSGHRLVQELAALPQRFLFVEVAELRARLARLAVTEVDLFLPFSRGEPG LEALVDASSLALNCTPAINLFGKRLDRIQTSVSNWEYHVVPDRTRPLDYELHSLASVVGHGTGRVAEQAFAPLYTACHDE GPEQLAYYSLRREVRLPSTRQQEQGARSSYLGSEVFVSLVDPHNLPYAEDVRQLSLTGLVSNRDLPMLLSGSGWTLDLPG PVRGATCLRGPTAPHARLPRGDIGWQLISQLTLNHLSIAGEDPQRAAASLRSLLIHHGSADDAGWRKQVEGLRAVSAQPV TRRLPMPGPLAYGLGVAIDVTVDELAFQGGSAFLMGCVLERFLARQASINSFTQLRLIAPGRGTLMTWPPRVGSAAVI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0289 | NP_454871.1 | hypothetical protein | Not tested | SPI-6 | Protein | 4e-105 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Lcho_4086 | YP_001793103.1 | type VI secretion protein | VFG2074 | Protein | 6e-128 | 47 |
