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Name : Lcho_4084 (Lcho_4084) Accession : YP_001793101.1 Strain : Leptothrix cholodnii SP-6 Genome accession: NC_010524 Putative virulence/resistance : Virulence Product : type VI secretion ATPase Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 4577943 - 4580693 bp Length : 2751 bp Strand : - Note : KEGG: azo:azo3903 putative ATP-dependent Clp protease, ATP-binding subunit ClpB; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase AAA-2 domain protein; SMART: AAA ATPase DNA sequence : ATGACCGAGATCTCCCGCACGGCCCTGTTCGGCAAGCTCGACCCGCTGGCCTACAAGGCGATCGAAGGCGCCACGGTGTT CTGCAAGATGCGCGGCAATCCCTACGTCGAGCTGCAGCACTGGCTGGCGCAGATCCTCAACACGCCCGATTCCGACCTGC ACCGCATCATTCGCCACTACGAGCTCGACAGCGCCGCGCTCGCCGCCGACCTGACGCGCTCGCTCGACCGCCTGCCGCGC GGCGCCTCGTCGATCTCGGACTTCTCGACCTTCGTGCTCGATGCGGTCGAGCGGGCCTGGATCTACGGCTCGCTGATGTT CGGCGAACGCCAGATCCGCACCGGCCACCTGCTGATCGGGCTGCTCAAGACGCCGTCGCTGCGCAACGTGCTGCTGTCGA TCTCGAAGCAGTTCGAGCGCGTCAAGCTCGATGACCTGGCCGACCGATTCGCCAGCCTGCTGGCGGCGTCGCCCGAGCAG TCGCAAGGCGCCAGCGACAGCGGTGCCGCACCCGGCGAGGCCAGCGACGCGATCCCGCCCGCGGCGATGGGCAAGCAGGA GGCGCTCAAGCGCTTCACCACCGACCTCACCGAGCAGGCGCGCGCCGGCAAGATGGACCCGATCGTCGGCCGCGACGACG AGATCCGCCAGGTGGTCGACATCCTGATGCGCAGGCGCCAGAACAACCCGATCCTGGTCGGCGAGGCCGGTGTCGGCAAG ACCGCGGTGGTGGAAGGTTTCGCCCAGCGCATCGCCCGCGGCGACGTGCCGCCGGCGCTGAAGGAGGTGCAGCTGCTCGC GCTCGACGTCGGCCTGCTGCAGGCGGGGGCGAGCATGAAGGGCGAGTTCGAGCAGCGCCTGCGTTCGGTGATCGAGGAGG TGCAGGCGAGCCCGAAGCCGATCATCCTGTTCGTCGACGAGACCCACACGCTGGTCGGCGCCGGTGGCGCGGCCGGCACG GGGGACGCGGCCAACCTGCTCAAGCCCGCGCTGGCCCGCGGCACGCTGCGCACGGTGGGCGCCACCACCTTTGCCGAGTA CAAGAAATACATCGAGAAGGACCCGGCGCTGACGCGGCGTTTCCAGAGCGTGCAGGTCGACGAGCCGGATGAAAAACGCG CCATCCTGATGATGCGCGGCGTCGCCAGCACGATGGAAAAGCACCACCAGGTGCAGATCCTCGACGAGGCGCTGGAGGCC GCCGTCAAGTTGAGCCACCGCTACATCCCGGCGCGCCAGCTGCCCGACAAGAGCGTCAGCCTGCTCGACACCGCCTGCGC CCGCGTGGCGGTGAGCCTGCACGCGACGCCGGCCGAGGTCGACGACACGCGCAAGCGCATCGAGGCGCTCGAGACCGAGC TCGGCATCATCGGCCGCGAGCGCGCCATCGGCATCGACGTGCTGGAACGCGAGGCCGATGCATCGCGCCTGCTGGCCGAT GAACGCGAGCGCCTGGCCCTGCTCGACCAGCGCTGGGCCGAAGAGAAGACGCTGGTCGACGAGCTGCTCGCCCTGCGCGC GAAGCTGCGTGGCGGCGTGCGGCCGGTCGAAGGCACCGGCAGCGAACTCGAAGCGGCGGTGGCGCCGGTGGCCGAGGGGG TCGCCGAGCCGGGTCTGAGCGAGGGCGAGCGCGCCGACGCGCTGGCCCGCCTGCGCGAGGTGCAGGCGCAGCTCGCCACG CTGCAAGGCGAGAGCCCGCTGATCCTGCCCACGGTCGACTACCAGGCGGTGGCCAGCGTGGTCGGCGACTGGACCGGCAT CCCGGTCGGCCGCATGGCGCGCAACGAGATCGACACCGTGCTCAAGCTGCCCACGCTGCTGGCCCAGCGCGTGATCGGCC AGGACCACGCGATGGAGATGATCGCCAAGCGCATCCAGACCTCGCGCGCCGGCCTCGACAACCCGGGCAAGCCGATCGGC GTCTTCATGCTCGCCGGCACTTCGGGCGTCGGCAAGACCGAAACCGCGCTGGCGCTGGCCGAGGCGCTCTACGGCGGCGA GCAGAACCTCATCGTCATCAACATGAGCGAGTACCAGGAGGCTCACACCGTGAGCTCGCTCAAAGGCGCGCCACCCGGCT ACGTCGGCTATGGCGAAGGGGGCGTGCTGACCGAGGCGGTGCGCCGCAAGCCCTACAGCGTGGTGCTGCTCGACGAGGTC GAGAAGGCCCACCCGGATGTGCACGAGCTGTTCTTCCAGGTCTTCGACAAGGGCTTCATGGAAGACGGCGAAGGCCGCGT GATCGACTTCAAGAACACCCTGATCCTGCTGACCACCAACGCCGGCACCGAGCTGATCTCGGCGCTGTGCCGCGACCCCG CGCGCATGCCCGACCCGGAGGGCATGGCGAAGGCGCTGCGCCAGCCGCTGCTGGAGATCTTTCCGCCCGCGCTGCTCGGC CGGCTGGTGGCGATCCCGTATTACCCGCTCAGCGACGAGATGCTCGGGCGCATCGTCAAGCTGCAGCTGGAGCGCATCCG CAAGCGGGTGGAGACGCGCTACAAGATCCCGTTCGAGTATGGCGACGACGTGGTCGAGCTGGTGGTCAGCCGCTGCACCG AGAGCGAGTCGGGCGGGCGGATGATCGACGCGATCCTGACCAACACGATGCTGCCGGACATCAGCCGCGAGTTCCTGAAT CGCATGCTCGATGGCACGCCGATCGAGCGGGTGGAGGTGCAGGTCAGCGAAGGCAATTTCGCCTACGGCTTCGGGCCCGA CACGGCCGCGCCCGCACGCGATGAACCCTGA Protein sequence : MTEISRTALFGKLDPLAYKAIEGATVFCKMRGNPYVELQHWLAQILNTPDSDLHRIIRHYELDSAALAADLTRSLDRLPR GASSISDFSTFVLDAVERAWIYGSLMFGERQIRTGHLLIGLLKTPSLRNVLLSISKQFERVKLDDLADRFASLLAASPEQ SQGASDSGAAPGEASDAIPPAAMGKQEALKRFTTDLTEQARAGKMDPIVGRDDEIRQVVDILMRRRQNNPILVGEAGVGK TAVVEGFAQRIARGDVPPALKEVQLLALDVGLLQAGASMKGEFEQRLRSVIEEVQASPKPIILFVDETHTLVGAGGAAGT GDAANLLKPALARGTLRTVGATTFAEYKKYIEKDPALTRRFQSVQVDEPDEKRAILMMRGVASTMEKHHQVQILDEALEA AVKLSHRYIPARQLPDKSVSLLDTACARVAVSLHATPAEVDDTRKRIEALETELGIIGRERAIGIDVLEREADASRLLAD ERERLALLDQRWAEEKTLVDELLALRAKLRGGVRPVEGTGSELEAAVAPVAEGVAEPGLSEGERADALARLREVQAQLAT LQGESPLILPTVDYQAVASVVGDWTGIPVGRMARNEIDTVLKLPTLLAQRVIGQDHAMEMIAKRIQTSRAGLDNPGKPIG VFMLAGTSGVGKTETALALAEALYGGEQNLIVINMSEYQEAHTVSSLKGAPPGYVGYGEGGVLTEAVRRKPYSVVLLDEV EKAHPDVHELFFQVFDKGFMEDGEGRVIDFKNTLILLTTNAGTELISALCRDPARMPDPEGMAKALRQPLLEIFPPALLG RLVAIPYYPLSDEMLGRIVKLQLERIRKRVETRYKIPFEYGDDVVELVVSRCTESESGGRMIDAILTNTMLPDISREFLN RMLDGTPIERVEVQVSEGNFAYGFGPDTAAPARDEP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 0.0 | 53 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 4e-140 | 42 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 6e-140 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Lcho_4084 | YP_001793101.1 | type VI secretion ATPase | VFG2076 | Protein | 0.0 | 76 |
| Lcho_4084 | YP_001793101.1 | type VI secretion ATPase | VFG2084 | Protein | 3e-150 | 43 |
