Gene Information

Name : Lcho_0404 (Lcho_0404)
Accession : YP_001789444.1
Strain : Leptothrix cholodnii SP-6
Genome accession: NC_010524
Putative virulence/resistance : Unknown
Product : short-chain dehydrogenase/reductase SDR
Function : -
COG functional category : I : Lipid transport and metabolism
COG ID : COG1028
EC number : -
Position : 442958 - 443707 bp
Length : 750 bp
Strand : +
Note : PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pol:Bpro_1454 short-chain dehydrogenase/reductase SDR

DNA sequence : 
ATGCTGCTGAAAGACAAAGTCGCCCTGATCACCGGCGGTGCCGGCCCCAACGGCCTCGGTTTCGCCACCGCCCGCATGAT
GGCCGAGCAGGGCGCGCGCATCGTCATCCTCGACCTGGCCCAGGCCGACCCGGCCGGCGCCGCCGCCCGCCTGGGCCCGC
AGCACATCGGCGTGGTCGCCGACGTGACCGACAAGGCATCCTGCGAGCTGGCCGCCAGGACGGTGCTCGAAACCTGCGGC
CGCATCGACGTGCTGGTCAACAACGCCGGCATCACCCAGCCGCGCAAGACCGTCGACATCACCGGCGCCGACTACGACGC
CGTGCTGGACGTGAGCCTGCGCGGCACGCTCTACATGTCGCAGGCCGTGCTGCCGGCGATGCGCGCGCAGAAGGGCGGCG
CGATCGTCTGCATCTCGTCGGTCTCGGCGCAGCGCGGCGGCGGCATCCTGGGCGGCCCGCACTACTCGGCGGCCAAGGCC
GGCGTGCTGGGCCTGGCGCGGGCGATGGCGCGTGAATACGGCAACGACAACGTGCGCATCAACTGCGTCACGCCGGGCCT
GATCGCCACCGACATCAACAAGGGCCTGATCCCGGCCGACCGCATGGTCGGCATCCTCGAGCAGATCCCGCTCAACCGCA
TCGGCGGCCCCGACGACGTCGCCGGCTGCGTGGTGTTCCTGGCCAGCGACCTGGCCAGGTACTGCACCGGCGTCACGCTC
GACGTCAACGGCGGCATGCTGATCCACTGA

Protein sequence : 
MLLKDKVALITGGAGPNGLGFATARMMAEQGARIVILDLAQADPAGAAARLGPQHIGVVADVTDKASCELAARTVLETCG
RIDVLVNNAGITQPRKTVDITGADYDAVLDVSLRGTLYMSQAVLPAMRAQKGGAIVCISSVSAQRGGGILGGPHYSAAKA
GVLGLARAMAREYGNDNVRINCVTPGLIATDINKGLIPADRMVGILEQIPLNRIGGPDDVAGCVVFLASDLARYCTGVTL
DVNGGMLIH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAT96098.1 putative short-chain type regulator dehydrogenase Not tested T-PAI Protein 1e-66 65
unnamed AAT96115.1 putative short-chain type regulator Not tested T-PAI Protein 3e-67 64
unnamed AAT96054.1 putative short-chain type regulator Not tested T-PAI Protein 3e-66 64
unnamed AAT96227.1 putative short-chain type regulator Not tested T-PAI Protein 1e-66 64
unnamed AAT96175.1 putative short-chain type regulator Not tested T-PAI Protein 1e-66 64