Gene Information

Name : Lcho_3979 (Lcho_3979)
Accession : YP_001792998.1
Strain : Leptothrix cholodnii SP-6
Genome accession: NC_010524
Putative virulence/resistance : Unknown
Product : short-chain dehydrogenase/reductase SDR
Function : -
COG functional category : I : Lipid transport and metabolism
COG ID : COG1028
EC number : -
Position : 4465655 - 4466395 bp
Length : 741 bp
Strand : +
Note : PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rfr:Rfer_4047 3-oxoacyl-(acyl-carrier-protein) reductase

DNA sequence : 
ATGCGATTGAAAAACAAGGTTTCCATCATCACCGGCGCGGCCCAGGGCATCGGCCTGGCCACGGCGCTCAAGTTCGCCCG
CGAAGGTGCGATCGTGATCGTCTGCGACCTGCGCCAGGCCGCGGTCGATGCGGCAGTGGCCCAGTGCCGCGAGCTGGGCG
CGTTGGCCGACGGCTTTGCGCTCGACGTCACCGACCGCACGGCGGTCGACGCGATGGTGGCCGCCGTCAAGGCCCGCCAC
GGCCGCATCGACACGCTGGTCAACAACGCCGGCATCACGAAGGACGCGCGGCTGCAGAAGATGACGATCGAGCAGTTCGA
CGCCGTGATCGACGTCAACCTGCGCGCGGTCTTCCACTGCGCGCAGGCGGTGGCAGATACGATGGTCGAGCAGGGCGCGG
GCGTGATCCTGAACGCCAGCAGCGTGGTCGGCATCTACGGCAACTTCGGCCAGACCAACTACGCGGCCACCAAATTCGGC
GTGATCGGCTTCACCAAAACCTGGAGCCGCGAGCTCGGCCCCAAGGGCGTGCGGGTCAATGCGGTGGCGCCGGGTTTCAT
CGAGACGCCGATCCTCGCGACCATCCCCGACAAGGTGATGGAGCAGATGCGCCACGACGTGCCGCTGCGCCGCCTGGGCA
AGCCCGAGGAGATCGCCAACGTCTACGCCTTCCTGGCCAGCGACGAGGCCAGCTACATCAACGGCACCGTGATCGAGGTG
GCAGGCGGGCTGACCGTCTGA

Protein sequence : 
MRLKNKVSIITGAAQGIGLATALKFAREGAIVIVCDLRQAAVDAAVAQCRELGALADGFALDVTDRTAVDAMVAAVKARH
GRIDTLVNNAGITKDARLQKMTIEQFDAVIDVNLRAVFHCAQAVADTMVEQGAGVILNASSVVGIYGNFGQTNYAATKFG
VIGFTKTWSRELGPKGVRVNAVAPGFIETPILATIPDKVMEQMRHDVPLRRLGKPEEIANVYAFLASDEASYINGTVIEV
AGGLTV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAT96054.1 putative short-chain type regulator Not tested T-PAI Protein 1e-32 43
unnamed AAT96098.1 putative short-chain type regulator dehydrogenase Not tested T-PAI Protein 8e-32 43
unnamed AAT96175.1 putative short-chain type regulator Not tested T-PAI Protein 5e-32 43
unnamed AAT96227.1 putative short-chain type regulator Not tested T-PAI Protein 3e-32 43
unnamed AAT96115.1 putative short-chain type regulator Not tested T-PAI Protein 3e-33 42