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Name : Lcho_0380 (Lcho_0380) Accession : YP_001789420.1 Strain : Leptothrix cholodnii SP-6 Genome accession: NC_010524 Putative virulence/resistance : Virulence Product : two component sigma-54 specific Fis family transcriptional regulator Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG2204 EC number : - Position : 415560 - 417128 bp Length : 1569 bp Strand : + Note : PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mpt:Mpe_A3216 type IV pilus expression regulatory prote DNA sequence : ATGAGCCCGTCGCCCCTCCACAGCCTGCTGGTCGTTGATGACGAGCCGGACCTGCGCACGCTCTACGAACTGACGCTGCT GCGCGAGGGCTACGAGGTCGAGACCGCGGCCACCGTCGAGGAGGCCTGGGCCCAGTTGAAGGACCGCACCTACAGCGTGC TGATCACCGACATGCGGCTGCCCGACGGCAACGGCCTCGAGCTGCTGCGGCGCCTCGAGCAGAGCGGCCGCAGCGAGCGC ACCATCGTCATCACCGCCTACGGTTCGGCCGAAAACGCCGTGCTGGCGCTCAAGGCCGGGGCCTACGACTACCTCACCAA GCCGGTCGACCTGAAGCTGTTCCGCAGCGTCATCGCCTCCGCGCTGGGCCGCACGCCGAACGTGCGCGGCACGGCGGCGT CGGCGGATGTGCCGGCCGATTTCGGCCACGGCTCGCGCCTGCTTGCGCGCCGCAGCAGCGACAACGGCAGTGCCGCCTTG CGGCGCATGGCCGGCCAGTCGCAGGCCATGCAGCAGGTGCGCGAACTGGTCGAGAAGGTTGCGCGCAGCATGGCGCCGGT GCTGGTCCAGGGCGAGTCGGGTACCGGCAAGGAACTGGTCGCGCGCTCGATCCACCAGGTCAGCGCGCGCGCGGCCCAGC CCTTCATCGCGGTCAACTGCGGCGCCATCCCCGAGCAGCTGCTCGAGGCCGAGTTCTTCGGCTACCGCAAGGGCGCCTTC ACCGGCGCGGCCGAAGACCGCGAGGGCTTCTTCCAGGCCGCGCGCGGCGGCACCCTGTTCCTCGACGAGATCGGCGACCT GCCGATCTCGATGCAGAGCAAGCTGCTGCGGGCGATCCAGGAGCGTGCCGTGCGGCCGGTGGGCGCGGTCAGCGAGGTGC CGCTCGACGTGCGCATCATCAGCGCCACCCATCGCGATCTCGCCACCGAGGTGGCGGCGGGGCGTTTCCGCCAGGACCTC TATTACCGCCTCAACGTGATCCAGATCCGCGTGCCGCCCTTGCGCGAGCGCAGCGACGACCTGCCCGAACTGTGCACCCG CGTGCTCGAACGCATCGCCGCCGACACCGGCCTGACCCAGATCCCGCGGCTGACCGTGCAGGCGCTCGAACACCTGGCGC GCTACGACTTCCCTGGCAACGTGCGCGAGCTCGAGAACCTGCTGCACCGCGCGCTGGCCCTGTCCGGCGCGGCGCAGATC TGTGTCGACGACCTCGAGCTGCCGCGTGGCCAGGCCCGCGCGGGCGAGGGCGGCTGGGGCGTTGCGCCGCCCGCATCGAC CGCCTTGCAGGCGACCCAGCCGCCGGGGGCTGCCGTGGCGGACACCGGCGCCCCGCCGGCCAGCCTCGCCGACCTGGCGA TCCCGACCGACCTCGTCGGCTACCTCGACGAGGTCGAGCGTGCGGTGCTGGTGCGCGCCCTCGAACGCCACCGCTACAAC CGCACCGCGGCCGGCTCCAGCATGGGTCTGACCCTGCGGCAGATGCGCTATCGCATGGCGCGCCTGGGCATCCACGTCGC CGGCGAGGGCCTGATGGTCGACGACGTCGACGGCACCGGCCTCGAATGA Protein sequence : MSPSPLHSLLVVDDEPDLRTLYELTLLREGYEVETAATVEEAWAQLKDRTYSVLITDMRLPDGNGLELLRRLEQSGRSER TIVITAYGSAENAVLALKAGAYDYLTKPVDLKLFRSVIASALGRTPNVRGTAASADVPADFGHGSRLLARRSSDNGSAAL RRMAGQSQAMQQVRELVEKVARSMAPVLVQGESGTGKELVARSIHQVSARAAQPFIAVNCGAIPEQLLEAEFFGYRKGAF TGAAEDREGFFQAARGGTLFLDEIGDLPISMQSKLLRAIQERAVRPVGAVSEVPLDVRIISATHRDLATEVAAGRFRQDL YYRLNVIQIRVPPLRERSDDLPELCTRVLERIAADTGLTQIPRLTVQALEHLARYDFPGNVRELENLLHRALALSGAAQI CVDDLELPRGQARAGEGGWGVAPPASTALQATQPPGAAVADTGAPPASLADLAIPTDLVGYLDEVERAVLVRALERHRYN RTAAGSSMGLTLRQMRYRMARLGIHVAGEGLMVDDVDGTGLE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00300 | YP_008207765.1 | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | Not tested | AbaR25 | Protein | 2e-77 | 41 |
| BJAB0868_00304 | YP_008211630.1 | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | Not tested | AbaR26 | Protein | 2e-77 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Lcho_0380 | YP_001789420.1 | two component sigma-54 specific Fis family transcriptional regulator | VFG1214 | Protein | 5e-98 | 50 |
