|
Name : Lcho_3469 (Lcho_3469) Accession : YP_001792490.1 Strain : Leptothrix cholodnii SP-6 Genome accession: NC_010524 Putative virulence/resistance : Unknown Product : integrase family protein Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0582 EC number : - Position : 3882930 - 3884231 bp Length : 1302 bp Strand : + Note : PFAM: integrase family protein; KEGG: bam:Bamb_0912 phage integrase family protein DNA sequence : ATGGCAGCGACGAACAACCTCGACGACAAGAGCATCCGTGCCGCGATCAAGCGGGCGATGAAGGCGCAGGCCGGCGAGCG GCTGACCGATGGCGATGGCTTGCGCCTGGACGTGCAGCCGACCGGTTCTGCCTGGTGGCGCTGGCGCTACCGCTTCGGCG GGAAGGAGGGGATGCTGTCTCTCGGCACCTACCCCGACACGTCCCTGTCGGCAGCTCGCGGCAGGCGCGACGAGGCGCGC GAGCGGCTGGCAGCCGGGATCAACCCGAGCGAGGCGCGCAAGGATGACAAGGCGGCCCAGGCGCTGAAGGCTGAGGCTGC CCGCCTGGCCGCAGCGGGATTGCCCGGGCCTGGCACGTTCGAGCACGCGGCCCGGGAGTGGCATGCCCGCATGGCGCCGA GCTGGTCGGAAGGGCACGCTGGCAAGGTGCTGGCGCTACTGGTGAATGACCTGTTCCCCTTCATCGGCACGAGTGCGCTT GCCGAGCTGACCCCGCCCGAGCTGTTGAAGCACGCTCGGCGCATCGAGGCCCGCGGTGCGGTCGAAACCGCATACCGGGC CCTGAAGGCGGCTGGCGCCGTGTTCCGCCACGGCGTGCAGAACGGCTACTGCGACAGCGACCCCACGCGAGACCTGAAGG GCGCCATCGTGCTGCCCGTACCGGAGCATCGGGCTGCCATCACCGACCCAGCCAGGTTGGGCGAACTGCTGCGGGCCATC GACGGATACCAAGGCACGCCGGTTGTACGCTCCGCTCTCGCGCTGGCGCCGCTGGTTTTCCTGCGACCGGGTGAGCTGCG CAAGGCCGAGTGGGCAGAGTTCGACCTCGACGCAGCCGTGTGGACCATCCCGGCTGCGCGCATGAAGGGGCGGTTGAAAG CCAAGCTCAACGGCCCCGATCATGTGGTGCCGCTGGCGCCACAGGCGGCGGCAATCCTGCGCGACCTGCAACCGCTGACG GGTGCCGGCAAGTACGTGTTCCCGAATCCGCTCACGCCCGACCGTCCGCTATCCGACAACGGTGTGCTGTCAGCGCTGCG CCGGATGGGCTTCGACAAGGACGAGATGACGGGCCACGGATTCCGTGCCACGGCGCGGACCATCGCGGCCGAGCGGCTGA AGATCGACCCCGTGGTGCTCGAAGCGCAGCTTGCGCACGTAGTGGCCGATGCGCTGGGCCGGGCCTACAACCGTACGCAG TACCTCGACCAGCGCCGCGACATGATGACCCGCTGGGCCGACTACCTGGACCGCCTGCGCAAGGGCGCAGAGGTGGTCGA CCTGACAAGCAAGCGGGCCTGA Protein sequence : MAATNNLDDKSIRAAIKRAMKAQAGERLTDGDGLRLDVQPTGSAWWRWRYRFGGKEGMLSLGTYPDTSLSAARGRRDEAR ERLAAGINPSEARKDDKAAQALKAEAARLAAAGLPGPGTFEHAAREWHARMAPSWSEGHAGKVLALLVNDLFPFIGTSAL AELTPPELLKHARRIEARGAVETAYRALKAAGAVFRHGVQNGYCDSDPTRDLKGAIVLPVPEHRAAITDPARLGELLRAI DGYQGTPVVRSALALAPLVFLRPGELRKAEWAEFDLDAAVWTIPAARMKGRLKAKLNGPDHVVPLAPQAAAILRDLQPLT GAGKYVFPNPLTPDRPLSDNGVLSALRRMGFDKDEMTGHGFRATARTIAAERLKIDPVVLEAQLAHVVADALGRAYNRTQ YLDQRRDMMTRWADYLDRLRKGAEVVDLTSKRA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| int | AAK00456.1 | Int | Not tested | SHI-1 | Protein | 2e-52 | 41 |
| S4822 | NP_838459.1 | P4-type integrase | Not tested | SHI-1 | Protein | 4e-55 | 41 |
| SF2964 | NP_708738.1 | P4-type integrase | Not tested | SHI-1 | Protein | 4e-55 | 41 |
| ORF_1 | AAZ04412.1 | phage integrase | Not tested | PAI I APEC-O1 | Protein | 2e-54 | 41 |
| c5216 | NP_757064.1 | prophage P4 integrase | Not tested | PAI II CFT073 | Protein | 3e-54 | 41 |
| APECO1_3534 | YP_854214.1 | P4-like integrase | Not tested | PAI I APEC-O1 | Protein | 2e-54 | 41 |
| int | ADD91747.1 | P4 integrase | Not tested | PAI-I AL862 | Protein | 4e-55 | 41 |
| int | AAT48697.1 | CP4-like integrase | Not tested | PAI I 4787 | Protein | 3e-54 | 41 |
| int | AAL51003.1 | CP4-like integrase | Not tested | LEE | Protein | 2e-54 | 41 |
| ECUMN_3322 | YP_002414004.1 | integrase | Not tested | Not named | Protein | 3e-54 | 41 |
| intP4 | CAE85151.1 | CP4 integrase protein | Not tested | PAI V 536 | Protein | 4e-55 | 41 |
| int | AAK16198.1 | Int | Not tested | PAI-I AL862 | Protein | 4e-55 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Lcho_3469 | YP_001792490.1 | integrase family protein | VFG0626 | Protein | 2e-55 | 41 |
