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Name : Lcho_3428 (Lcho_3428) Accession : YP_001792451.1 Strain : Leptothrix cholodnii SP-6 Genome accession: NC_010524 Putative virulence/resistance : Virulence Product : general secretory pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 3811993 - 3813408 bp Length : 1416 bp Strand : + Note : KEGG: mpt:Mpe_A3137 pili biogenesis ATPase; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase DNA sequence : ATGCGCCACCCGCTGCCCTACGCCTGGGCCAAGACCCAGCAGATCCTGCTCGAAGACGACAACGACCGGCTGGTGCTGTG GGCCGCCGCCGGCGTCAACCGCAGCGCGCTGGCCGAGGTGCAGCGCGTCTACGCCGTCGACGCGCTCGAGATCGAGGAGC CCGCCCGCCTGGCGCAGCGCCTGGCCGCGGCCTACGCGGGCGGCGAGTCGAGCGCCGCGGCCGTGGTCGGCGAGGTCGAG AGCGCCGTCGATCTGAGCCGCATCATGCAGGACCTGCCGGCGGTCGAAGACTTGCTGGAGGCCAGCAACGACGCGCCGAT CATCCGCATGCTCAACGCGCTGCTGACGCAGGCCGCGAAAGACGGCGCCAGCGACATCCACATCGAGCCCTACGAGCGTT CGTCGGCGGTGCGTTTCCGCGTCGACGGCACGCTGCGCGAGGTGGTGCAGCCCAACCGCGCGCTGCACGCCGCGCTGATC AGCCGGCTGAAGATCATGGCCGAGCTCGACATCGCCGAAAAACGCCTGCCGCAGGACGGCCGCATCAGCCTGCGCATCGG CGGGCGGGCGATCGACGTGCGGGTCTCGACGCTGCCGGGCGTGCACGGTGAACGCGCGGTGCTGCGCCTCCTGGACAAGG GCGAGGCCAAGTTCTCGCTCGAAGGCCTGGGCATGGCCGGCGACACGCTGGCCCGCTTTCAGAAACTGCTGGCGCAGCCG CACGGCATCGTGCTCGTCACCGGCCCGACCGGCTCGGGCAAGACCACCACGCTCTACGCCGGGCTGGGCGAGGTAGACAC CAGCACCACCAACATCCTGACGGTGGAAGACCCGGTCGAATACGAGCTGCCGGGCATCGGCCAGACCCAGGTCAACGCCA AGATCGACCTGACCTTCGCAAAAGCCCTGCGCGCGATCCTGCGGCAGGACCCGGACGTCATCATGATCGGCGAGATCCGC GACCACGAGACCGCGCAGATCGCCGTGCAGGCCTCGCTCACCGGCCACCTGGTGCTGGCCACGCTGCACACCAACGACGC GCCGAGCGCCGTCACCCGGCTGACCGACATGGGCATCGAGCCCTTCCTGCTCAGCTCCAGCCTGATCGGCGTGCTGGCGC AGCGGCTGGTGCGCAAGCTCTGCAACGACTGCAAGCGCCAGGACGAGCGCGGGCGCTGGCACCCGGTCGGCTGCACCGCC TGCGGCATGACCGGCTACCGCGGCCGCACCGGCATCTACGAACTGATGGTGGCCGACGACAAGCTGCGCGCGCTGATCCA CAACCGCGCCGCCGAGTCGCAGATCTTCGTGGCCGCTGAACAAGGTGGCATGAAGACCATGCGCGAGGACGGCACCCGGC TGGTGGCGGACGGCATCACGTCCAGCGAAGAGCTGCTGCGGGTCACCCGAGAATGA Protein sequence : MRHPLPYAWAKTQQILLEDDNDRLVLWAAAGVNRSALAEVQRVYAVDALEIEEPARLAQRLAAAYAGGESSAAAVVGEVE SAVDLSRIMQDLPAVEDLLEASNDAPIIRMLNALLTQAAKDGASDIHIEPYERSSAVRFRVDGTLREVVQPNRALHAALI SRLKIMAELDIAEKRLPQDGRISLRIGGRAIDVRVSTLPGVHGERAVLRLLDKGEAKFSLEGLGMAGDTLARFQKLLAQP HGIVLVTGPTGSGKTTTLYAGLGEVDTSTTNILTVEDPVEYELPGIGQTQVNAKIDLTFAKALRAILRQDPDVIMIGEIR DHETAQIAVQASLTGHLVLATLHTNDAPSAVTRLTDMGIEPFLLSSSLIGVLAQRLVRKLCNDCKRQDERGRWHPVGCTA CGMTGYRGRTGIYELMVADDKLRALIHNRAAESQIFVAAEQGGMKTMREDGTRLVADGITSSEELLRVTRE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-110 | 60 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-110 | 60 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Lcho_3428 | YP_001792451.1 | general secretory pathway protein E | VFG0182 | Protein | 2e-113 | 61 |
| Lcho_3428 | YP_001792451.1 | general secretory pathway protein E | VFG2048 | Protein | 6e-110 | 60 |
| Lcho_3428 | YP_001792451.1 | general secretory pathway protein E | VFG1876 | Protein | 3e-112 | 53 |
| Lcho_3428 | YP_001792451.1 | general secretory pathway protein E | VFG2426 | Protein | 1e-73 | 47 |
| Lcho_3428 | YP_001792451.1 | general secretory pathway protein E | VFG0233 | Protein | 2e-83 | 47 |
| Lcho_3428 | YP_001792451.1 | general secretory pathway protein E | VFG0112 | Protein | 1e-82 | 46 |
