Gene Information

Name : Lcho_3419 (Lcho_3419)
Accession : YP_001792442.1
Strain : Leptothrix cholodnii SP-6
Genome accession: NC_010524
Putative virulence/resistance : Virulence
Product : general secretion pathway protein G
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3803828 - 3804280 bp
Length : 453 bp
Strand : +
Note : TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: mpt:Mpe_A3128 general secretion pathway protein G

DNA sequence : 
ATGATGCGTCCCGAGCGTTTGAAATCCATGACCCGAGCCCTGCGCGCCAGCCGCGGCTTCACGCTGATCGAGCTGATGGT
GGTGCTGGTGATCATCGGCGTGCTGGCCGCGCTGGTGGTGCCCAACGTGCTCGACCGCGCCGACGACGCCCGCGTGACCG
CCGCCAAGACCGACATCAACAACCTGATGCAGGCACTCAAGCTCTACAAGCTCGACAACCAGCGCTACCCGACCAGCGAG
CAGAACCTGCAGGCGCTGGTGGCCAGGCCGAGCGCCGGCCCGAACCCGCCCAACTGGAAGCCCTATCTCGAGAAGCTGCC
CAACGACCCGTGGGGTCGGCCCTACCAGTACGCCAACCCGGGCGTGAAGGGCGAGATCGACGTGTTCAGTTTCGGCGCCG
ACGGCCAATCCGGAGGCGAAGGCAAGGATGCCGATCTGGGCTCGTGGCAATGA

Protein sequence : 
MMRPERLKSMTRALRASRGFTLIELMVVLVIIGVLAALVVPNVLDRADDARVTAAKTDINNLMQALKLYKLDNQRYPTSE
QNLQALVARPSAGPNPPNWKPYLEKLPNDPWGRPYQYANPGVKGEIDVFSFGADGQSGGEGKDADLGSWQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspG CAE85231.1 GspG, hypothetical type II secretion protein Not tested PAI V 536 Protein 4e-23 50
gspG YP_854404.1 type II secretion protein GspG Not tested PAI I APEC-O1 Protein 5e-23 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lcho_3419 YP_001792442.1 general secretion pathway protein G VFG0180 Protein 6e-28 58
Lcho_3419 YP_001792442.1 general secretion pathway protein G VFG1871 Protein 3e-29 55
Lcho_3419 YP_001792442.1 general secretion pathway protein G VFG2050 Protein 1e-23 50