Gene Information

Name : Lcho_3170 (Lcho_3170)
Accession : YP_001792194.1
Strain : Leptothrix cholodnii SP-6
Genome accession: NC_010524
Putative virulence/resistance : Virulence
Product : resolvase domain-containing protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1961
EC number : -
Position : 3502013 - 3502615 bp
Length : 603 bp
Strand : +
Note : PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: rme:Rmet_6187 resolvase-like protein

DNA sequence : 
ATGAAGACGACACCGACCACGCAAGCCCAGGCAGACGCTGGCCACCGCGTGGGCTACATCCGGGTTTCGAGCGTCGACCA
GAACACGACCCGTCAGCTTGACGGCCTGGTGCTGCACAAGGTGTTCACCGATCACGCCAGCGGCGGCACGACGAACCGCC
CGGCGCTGGCCGAAGCGCTGGCCCATGTGCGGGCGGGTGACTGCCTGGTGGTCCACTCCATGGATCGGCTCGCCCGCAAC
CTGGACGATTTGCACCGCATCGTGCGCGAGCTGACCGACCGTGGCGTGTCGGTCGAGTTCGTCAAGGAAGGGCAGACATT
CACCACTGAGGGTGTCAACCCGATGGCCAACCTGATGCTGTCGATGCTGGGCGCGTTTGCCGAGTTCGAGCGTTCACTGA
TCCGGGAGCGCCAGCGGGAGGGCATCGCCATCGCGCGCGGGCAGTCCGACAAGTACCGGGGCCGGGCGCCGGCCCTGACC
GCGGAGCAAGCCGCGGATCTGCGCCAGCGCGATGCGGCGCAAGGCGGCAAGGGCCGGGCGGCGCTCGCTCGTGACTTCGG
CGTGTCGCGCCAGACGCTGTATCAGTACCTGGCGAAGGACTGA

Protein sequence : 
MKTTPTTQAQADAGHRVGYIRVSSVDQNTTRQLDGLVLHKVFTDHASGGTTNRPALAEALAHVRAGDCLVVHSMDRLARN
LDDLHRIVRELTDRGVSVEFVKEGQTFTTEGVNPMANLMLSMLGAFAEFERSLIRERQREGIAIARGQSDKYRGRAPALT
AEQAADLRQRDAAQGGKGRAALARDFGVSRQTLYQYLAKD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpR ACF06154.1 resolvase Not tested Tn5036-like Protein 3e-47 60
tnpR AAL08439.1 resolvase TnpR Not tested SRL Protein 8e-47 57
tnpR AFV53121.1 Tn21 resolvase Not tested AbGRI2-1 Protein 8e-47 57
tnpR YP_006098373.1 transposon Tn21 resolvase Not tested Tn2411 Protein 1e-46 57
tnpR ACY75537.1 TnpR Not tested Tn6060 Protein 1e-48 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lcho_3170 YP_001792194.1 resolvase domain-containing protein VFG1030 Protein 3e-47 57