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Name : Lcho_3079 (Lcho_3079) Accession : YP_001792104.1 Strain : Leptothrix cholodnii SP-6 Genome accession: NC_010524 Putative virulence/resistance : Virulence Product : NAD-dependent epimerase/dehydratase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0451 EC number : - Position : 3409045 - 3410055 bp Length : 1011 bp Strand : - Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: eba:ebA1639 predict DNA sequence : ATGAAGATACTCATCACGGGCGCGGCCGGTTTCATCGGCATGCACACGGCCCAACGCCTGATCGCCGACGGACATCAGGT GGTCGGCATCGACAACCTCAACGACTACTACGACGTCCAGCTCAAGCGCGATCGCCTGGCCCGGCTGGCCGAGCTGCCGG GTTTCACCTTCGTGCAGGTCGACGTGGCCGACCGCGACGCGCTGATGGCGCTGTTCGATGCCCATGCGGTCACGCGGGTC GTGCACCTGGCGGCACAGGCGGGGGTGCGTTATTCGATCACCAACCCGCACGCCTACGGCGAGGCCAATCTGGTCGGCTT CCTGAACATGCTCGAGGCCTGCCGGCAGCACCGCATCGAACACCTGGTCTATGCGAGCAGTTCGAGCGTCTACGGCGGCA ACCGCAAGATGCCGTTCTCGGAAGGTGACTCGGTGGATCACCCGGTGAGCCTGTACGCCGCCACCAAGAAGGCCAACGAG CTGATGGCGCATGCCTACAGCCATCTCTACGCCATCCCGACCACGGGCCTGCGCTTCTTCACGGTCTACGGCCCGTGGGG CCGGCCTGACATGGCCTACTTCTCGTTCACCAAGGCGATCGTCGAAGGCCGGCCGATCCAGGTGTTCAACAACGGCGACA TGCTGCGCGACTTCACCTACATCGATGACATCGTCGACGGCGTCGTGGCCACCTTGTATCGGCCCGCCACTGCCGATGCG GCATTCGATCCGTTGCTGCCGCACCCGGGGCGGGCTCAGAAGCCGTTCCGTGTCTTCAACATCGGCAATCAGGATCCGGT GGCGCTCGGCGATTTCATCGCCGCCATCGAAGCGGCCGTCGGCAAGTCGGCGATCAAGGAGATGTTGCCGATGCAGCCGG GCGACGTTCAGGCGACCTATGCCGACGTGTCGGCGCTGGCCGAATGGACCGGCGTGCAGCCGAAGACATCGATCCGGACT GGCATCGACCGTTTTGTCGCCTGGTACAAGGCCTACTACCGCGTCACCTGA Protein sequence : MKILITGAAGFIGMHTAQRLIADGHQVVGIDNLNDYYDVQLKRDRLARLAELPGFTFVQVDVADRDALMALFDAHAVTRV VHLAAQAGVRYSITNPHAYGEANLVGFLNMLEACRQHRIEHLVYASSSSVYGGNRKMPFSEGDSVDHPVSLYAATKKANE LMAHAYSHLYAIPTTGLRFFTVYGPWGRPDMAYFSFTKAIVEGRPIQVFNNGDMLRDFTYIDDIVDGVVATLYRPATADA AFDPLLPHPGRAQKPFRVFNIGNQDPVALGDFIAAIEAAVGKSAIKEMLPMQPGDVQATYADVSALAEWTGVQPKTSIRT GIDRFVAWYKAYYRVT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1I | AAA64648.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 5e-92 | 55 |
