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Name : Lcho_3069 (Lcho_3069) Accession : YP_001792094.1 Strain : Leptothrix cholodnii SP-6 Genome accession: NC_010524 Putative virulence/resistance : Virulence Product : nucleotide sugar dehydrogenase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0677 EC number : - Position : 3395990 - 3397270 bp Length : 1281 bp Strand : - Note : TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: dar:Daro_2440 UDP-glucose/GDP-mannose dehydrogenase:6-phosphogluconate d DNA sequence : ATGACAACTATTGCTGTCGTGGGTTTGGGCTATGTCGGCCTGCCCCTTGCCGTCGAGTTCGGCAAGAAGCACCGCACCAT CGGTTTTGACCTGTCGCAGGCCAAGATCGATGCGTACAAGCGCCATGTCGATCCGACAGGCGAGGTCAGCACCGAGTTGC TGCAGTCGTCGACCGGGCTCGAGCCCACGACCGACGCCTCGGCGCTGCGCGAGGCCGATTTCGTGGTGGTCGCCGTGCCG ACGCCGGTCGACGACGCTCACAACCCCGACTTCAGCCCGCTCGTGGGCGCCAGCCGTTCGGTCGGGCGCAACCTCAAGCC GGGTGCGATCGTGGTCTATGAGTCGACCGTCTACCCCGGTGCGACCGAAGAGGTGTGCATCCCGATCCTGGAAAAAGAGT CCGGCCTCAAGTGGCAGAAGGACTTCTGGGTCGGCTATTCGCCCGAGCGCATCAACCCGGGCGACAAGCTGCACACGCTG ACCACCATCACCAAGGTGGTGTCGGGCGACTGCCCCGAAACCTTGGCCAAGGTGGCCGATGTCTACGGCAGCATCATCAC CGCCGGGGTCTACAAGGCCAGCTCGATCAAGGTGGCCGAGGCCGCCAAGGTGATCGAGAACACCCAGCGCGACCTCAACA TCGCGCTCGTCAACGAGCTGTCGCTGATCTTCCACCGCATCGGCATCGACACCACCGAGGTGCTGCAGGCTGCGGGCACC AAGTGGAACTTCCTGCCGTTCCGCCCGGGCCTGGTCGGCGGCCATTGCATCGGCGTCGATCCGTACTACCTGACCAACAA GGCCGAACGGATGGGCTATCACCCGCAGGTGATCCTGGCCGGGCGGCGCATCAACGACGGCATGGGCAAGTTCATCGCCG AGCAGACCGTCAAGGAGCTGATCCGCCTGGGCGCGCCGGTCAAGGGTGCGCACGTGATCGTGCAGGGCCTGACCTTCAAG GAAAACTGCCCCGACCTGCGCAACTCCAAGGTCATCGACGTGATCCGCGAGCTCGAGACCTACGGCGTGACGGTGCACGT GCACGACCCGGTGGCCGACCCGGCCGAGGCGATGCACGAATACGGCGTCGAGCTGGTCGAGTGGGCGCACCTGCCCCGCG CCAACGCGATCGTCGCGGCGGTGGCCCACGATGAACTGGCGCATCGCCCGATCGACGCCCTGCTGACCAAGCTGGCGCCG GGCGGCCTGTACGTCGACGTCAAGGCCCAGGCCGACCGTGCCGCGCTGGAGGCACGTGGCATCCACGTGTGGCGCCTGTG A Protein sequence : MTTIAVVGLGYVGLPLAVEFGKKHRTIGFDLSQAKIDAYKRHVDPTGEVSTELLQSSTGLEPTTDASALREADFVVVAVP TPVDDAHNPDFSPLVGASRSVGRNLKPGAIVVYESTVYPGATEEVCIPILEKESGLKWQKDFWVGYSPERINPGDKLHTL TTITKVVSGDCPETLAKVADVYGSIITAGVYKASSIKVAEAAKVIENTQRDLNIALVNELSLIFHRIGIDTTEVLQAAGT KWNFLPFRPGLVGGHCIGVDPYYLTNKAERMGYHPQVILAGRRINDGMGKFIAEQTVKELIRLGAPVKGAHVIVQGLTFK ENCPDLRNSKVIDVIRELETYGVTVHVHDPVADPAEAMHEYGVELVEWAHLPRANAIVAAVAHDELAHRPIDALLTKLAP GGLYVDVKAQADRAALEARGIHVWRL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1L | AAA64651.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 1e-107 | 58 |
| tviB | NP_458740.1 | Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 1e-99 | 54 |
| tviB | NP_807945.1 | VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 1e-99 | 54 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Lcho_3069 | YP_001792094.1 | nucleotide sugar dehydrogenase | VFG0431 | Protein | 6e-100 | 54 |
