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Name : Lcho_3068 (Lcho_3068) Accession : YP_001792093.1 Strain : Leptothrix cholodnii SP-6 Genome accession: NC_010524 Putative virulence/resistance : Virulence Product : NAD-dependent epimerase/dehydratase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0451 EC number : - Position : 3394959 - 3395990 bp Length : 1032 bp Strand : - Note : PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: tbd:Tbd_0099 NAD-dependent epimerase/dehydratase DNA sequence : ATGCTGACGCTGCAACCCGACCTCGTCGCGCTGCTCGAAGGCCAGTCGCGCCGCTGGCTGGTGACCGGCAGCGCCGGTTT CATCGGCTCGCACCTGCTCGAGACCCTGCTGGCGCACGGCCAGCAGGTCACCAGCCTGGACAACTTCGCCACCGGGCACC GTCACAACCTGCAGGCGGTGCGTGAATCGGTGGGCGAGGCCGCCTGGGCGCGCCACCATTTCATCGAAGGCGACATCGCC GACCCGGACACCTGCGTGGCCGCCTGCGAGGGCGCCCAGTTCGTGCTGCACCAGGCCGCGCTCGGTTCGGTGCCGCGTTC GCTGAAGGATCCGCAGACCACGCACCGCGCCAACGCGACCGGCTTCCTGAACATGCTGGTGGCTGCGCGTGATGTCGGCG CTCGCTTCGTCTACGCCGCCTCCAGTTCGACCTACGGCGATTCGCCCACCTTGCCCAAGGTCGAGGACGTGATCGGCCGG CCGTTGTCGCCGTACGCGGTCACCAAGTACCTCAACGAGCTGTATGCCGAGGTGTTCGGGCGCTGCTACGGCATGCAGAC GATCGGCTTGCGCTACTTCAACGTCTTCGGCCCGCGCCAGGATCCGAACGGCGCCTACGCCGCGGTGATCCCGCGCTGGA TCGCCGCGATGCTGCGCGGCGAGCCGTGCACGATCAACGGCGATGGCGAGACGTCGCGCGATTTCTGCTACATCGCCAAC ACCGTGCAGGCCAATCTGCGCGCCGCCCTGGCCACCCAGGACGCCGCCGTGAACCAGGTCTACAACGTCGCCGTCGGCGA TCGCACCACGCTCAATCAGCTGCATGCGGCGCTGGCTGCCGGCGTCGAGCGGGAGCGGCCGTCGCTCCAGGTGGCGCAGC CGGCGTACGCCGACTTCCGCGGAGGCGACGTGCGCCATTCGCTGGCCGACGTCAGCAAGGCGCGCACGTTGCTGGGCTAT GAGCCCACGCACGACGTTCATGAAGGCCTGGCCGAGGCGATCGCCTGGTACGTGGCCAACGCGGCAGCCTGA Protein sequence : MLTLQPDLVALLEGQSRRWLVTGSAGFIGSHLLETLLAHGQQVTSLDNFATGHRHNLQAVRESVGEAAWARHHFIEGDIA DPDTCVAACEGAQFVLHQAALGSVPRSLKDPQTTHRANATGFLNMLVAARDVGARFVYAASSSTYGDSPTLPKVEDVIGR PLSPYAVTKYLNELYAEVFGRCYGMQTIGLRYFNVFGPRQDPNGAYAAVIPRWIAAMLRGEPCTINGDGETSRDFCYIAN TVQANLRAALATQDAAVNQVYNVAVGDRTTLNQLHAALAAGVERERPSLQVAQPAYADFRGGDVRHSLADVSKARTLLGY EPTHDVHEGLAEAIAWYVANAAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tviC | NP_458739.1 | Vi polysaccharide biosynthesis protein, epimerase | Virulence | SPI-7 | Protein | 2e-97 | 60 |
| tviC | NP_807944.1 | VI polysaccharide biosynthesis epimerase | Virulence | SPI-7 | Protein | 2e-97 | 60 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Lcho_3068 | YP_001792093.1 | NAD-dependent epimerase/dehydratase | VFG0430 | Protein | 9e-98 | 60 |
