Gene Information

Name : Lcho_3011 (Lcho_3011)
Accession : YP_001792036.1
Strain : Leptothrix cholodnii SP-6
Genome accession: NC_010524
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3325356 - 3326021 bp
Length : 666 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rfr:Rfer_0503 two component transcriptional regulator, winged helix family

DNA sequence : 
ATGCGCATCCTGCTGGTTGAAGACGATCCCCTGCTCGGCGACGCGCTGCGCGCCGGCCTGCGCCAGCAGGGTTTCCAGGT
CGACTGGGTGCGCGAGGGGCCGGCCGCCGAACGCGAGCTGCTGACCGGCGCCTACCAGGCCGCGGTGCTCGACCTCGGCC
TGCCCGGCAAGGACGGCATCGAGGTGCTGGCCGACCTGCGCCGGCGCAAGATCGCCACCCCGGTGCTGGTGCTGACCGCG
CGTGCGGCGGTGCGCGACCGGGTGCACTGCCTCGACCTCGGCGCCGACGACTACGTCGTCAAGCCGGTCGACCTCGACGA
ACTGGCCGCCCGCCTGCGCGCGCTGGTGCGGCGCGCCCACGGTCAGGTCGAGGACAACCTGCGGGTCGGAGAGGTCGAGC
TGCGCCCGGGCTCGCGCGACGTCTTCTTCCGCGGCGAGCGGATCGCGCTGGCGGTGCGCGAGTTCGACCTGCTGCACGCG
CTGCTGCTCAACGCCGGGCGGGTGCTCACGCGAGACCAGATCGAGCAGCATCTGTACAGCTGGGGCCGCGAGGTCGAGAG
CAACGCGATCGAGGTGCACATCCACCACCTGCGCAAGAAGCTCGCGCCCGAGCTGATCGAGACGGTGCGCGGCGTCGGCT
ACATGATCGCGCGCGTCGACGGCTGA

Protein sequence : 
MRILLVEDDPLLGDALRAGLRQQGFQVDWVREGPAAERELLTGAYQAAVLDLGLPGKDGIEVLADLRRRKIATPVLVLTA
RAAVRDRVHCLDLGADDYVVKPVDLDELAARLRALVRRAHGQVEDNLRVGEVELRPGSRDVFFRGERIALAVREFDLLHA
LLLNAGRVLTRDQIEQHLYSWGREVESNAIEVHIHHLRKKLAPELIETVRGVGYMIARVDG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 7e-32 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lcho_3011 YP_001792036.1 two component transcriptional regulator BAC0197 Protein 1e-29 43
Lcho_3011 YP_001792036.1 two component transcriptional regulator BAC0083 Protein 2e-26 42
Lcho_3011 YP_001792036.1 two component transcriptional regulator BAC0487 Protein 4e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lcho_3011 YP_001792036.1 two component transcriptional regulator VFG0473 Protein 1e-35 45
Lcho_3011 YP_001792036.1 two component transcriptional regulator VFG1390 Protein 2e-21 42