Gene Information

Name : Lcho_2624 (Lcho_2624)
Accession : YP_001791654.1
Strain : Leptothrix cholodnii SP-6
Genome accession: NC_010524
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2874913 - 2875632 bp
Length : 720 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pna:Pnap_1535 two component transcriptional regulator, winged helix family

DNA sequence : 
ATGCGCCTTTTGCTTGCTGAAGACGATGCCCTGCTGGGCGATGGATTGCGCGCTGGCCTGCGTGCCCTGGGCTTCCAGGT
CGACTGGGTGCGCGACGGGGTGGCGGCCGAGCGCGAACTCTCCAACCAGAGCTATACCGCCGCCGTGCTGGATCTCGGCC
TGCCGCGCATCGATGGTCTCGACGTGCTGCAGGCGGTGCGTCGGCGTGGCGTCAAGACACCGGTGCTGGTGCTGACCGCC
CGTGATGCCGTGCCCCAGCGCATCGAGACCCTCGATGCCGGTGCCGACGACTATGTCGTCAAGCCGATCGACCTGCACGA
ACTGGCCGCACGGCTGCGTGCCCTGGTGCGCCGCTCGCACGGTCAGGTGCAGGACCTGATCAGCGTCAACGGCGTCGATC
TCGATCCCGGTGCCCGCGAGGTCAGGCTCGACGGCGATCCGATCAAGCTGTCGACCCGCGAGTTCGACCTGCTGCACGCG
CTGATGCTTCGGCCGGGCCGGGTCCTGACCCGCGAACAGCTCGAGAACCACCTCTACGGCTGGGGCGAGGAGGTCGGCAG
CAACACGGTCGAGGTGCACGTCCACCACCTGCGGCGCAAGCTCGGCAACCAGCGCATCCGCACCGTGCGCGGCGTCGGTT
ACGCATTTGCGCCGCCGCCGTCGAGCGAGGCGCCGCTCGATGCCGCACAGGCCGGCCCTCTGGCCCAGCCGATGGACTGA

Protein sequence : 
MRLLLAEDDALLGDGLRAGLRALGFQVDWVRDGVAAERELSNQSYTAAVLDLGLPRIDGLDVLQAVRRRGVKTPVLVLTA
RDAVPQRIETLDAGADDYVVKPIDLHELAARLRALVRRSHGQVQDLISVNGVDLDPGAREVRLDGDPIKLSTREFDLLHA
LMLRPGRVLTREQLENHLYGWGEEVGSNTVEVHVHHLRRKLGNQRIRTVRGVGYAFAPPPSSEAPLDAAQAGPLAQPMD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-31 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lcho_2624 YP_001791654.1 two component transcriptional regulator BAC0487 Protein 4e-33 46
Lcho_2624 YP_001791654.1 two component transcriptional regulator NC_002516.2.879194.p Protein 4e-23 45
Lcho_2624 YP_001791654.1 two component transcriptional regulator HE999704.1.gene1528. Protein 2e-19 41
Lcho_2624 YP_001791654.1 two component transcriptional regulator CP001918.1.gene2526. Protein 8e-21 41
Lcho_2624 YP_001791654.1 two component transcriptional regulator CP000647.1.gene1136. Protein 3e-21 41
Lcho_2624 YP_001791654.1 two component transcriptional regulator BAC0530 Protein 4e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lcho_2624 YP_001791654.1 two component transcriptional regulator VFG0473 Protein 7e-35 46
Lcho_2624 YP_001791654.1 two component transcriptional regulator VFG1390 Protein 7e-23 43