Gene Information

Name : Lcho_2612 (Lcho_2612)
Accession : YP_001791642.1
Strain : Leptothrix cholodnii SP-6
Genome accession: NC_010524
Putative virulence/resistance : Virulence
Product : general secretion pathway protein G
Function : -
COG functional category : N : Cell motility
COG ID : COG2165
EC number : -
Position : 2863849 - 2864310 bp
Length : 462 bp
Strand : +
Note : TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: rso:RSc2310 putative GspG-related transmembrane protein

DNA sequence : 
ATGGCGCAAGTTCCGTACACCGCTGCATCCGACCTGCGCCGAACGCGCGGCCCGAGCCCGTTGCAGAAGGGCTTCACCTT
GCTTGAACTGCTGGTGGTGATGGTCATCATCGGCTTGCTGGCCGGCATCGTCGCGCCCCAGTATTTCTCGCAGCTCGGCA
AGTCCAACACCAAGGTGGCCCGGGCTCAGATCGAGGCCTTCGGGCAGGCACTCGACCAGTACCGGCTCGACGTCGGCAGC
TACCCCACCACCGAACAGGGACTGATCGCGCTGCGCACCGCGCCGGCCGACACGCCGCGCTGGCAAGGCCCCTACCTCAA
GCGCGACATCCCGGCCGATCCCTGGGGGCGTCCCTACGTGTACCTGGCGCCCGGCCAGAAGTCCGAATACGACCTCTCGA
GCCTGGGCAGCGACGGCCAGGTCGGTGGCGAAGCCGAAGCCAGCGACGTGGTGTCCTGGTAA

Protein sequence : 
MAQVPYTAASDLRRTRGPSPLQKGFTLLELLVVMVIIGLLAGIVAPQYFSQLGKSNTKVARAQIEAFGQALDQYRLDVGS
YPTTEQGLIALRTAPADTPRWQGPYLKRDIPADPWGRPYVYLAPGQKSEYDLSSLGSDGQVGGEAEASDVVSW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspG YP_854404.1 type II secretion protein GspG Not tested PAI I APEC-O1 Protein 4e-26 46
gspG CAE85231.1 GspG, hypothetical type II secretion protein Not tested PAI V 536 Protein 2e-26 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lcho_2612 YP_001791642.1 general secretion pathway protein G VFG0180 Protein 2e-27 48
Lcho_2612 YP_001791642.1 general secretion pathway protein G VFG2050 Protein 1e-26 46
Lcho_2612 YP_001791642.1 general secretion pathway protein G VFG1871 Protein 5e-25 45