Gene Information

Name : Lcho_2529 (Lcho_2529)
Accession : YP_001791559.1
Strain : Leptothrix cholodnii SP-6
Genome accession: NC_010524
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2759328 - 2760026 bp
Length : 699 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pna:Pnap_2740 two component transcriptional regulator, winged helix family

DNA sequence : 
ATGCCGCGCCTGCTTCTGATCGACGACGATGAACATCTGGCCGCGCCTCTGGCGGCCTATCTGCGCCGTTTCGACCTCGA
CCTCGATCACGCCGAACGTCCCAGCCTCGGCCTGCAGCGGCTGGCCGGGGGCGGCTATGACGCGGTGATCCTCGACGTCA
TGCTGCCCGAGATGGACGGCTTCGAGGTCTGCCGCGAAATCCGCAAGACCAGCCAGATCCCGATCCTGATGCTGACCGCG
CGCGGCGACGTGATGGACCGCGTGATCGGCCTCGAACTCGGCGCCGACGACTACCTGCCCAAGCCCTTCGAGCCGCGCGA
GCTGGCGGCGCGGCTGCAGACCATCCTGCGGCGCCAGCGTGCGCCCGCGCCGGCAGCGGCGGCGGTGTCCACGACCCCGC
TCGTTTTCGACGGACTCGTGATCGACCTCGAGCGCCGCCAGGTGCTGGTGCAGGGCCGGCCGGTCGAACTGACCGGCACC
GAGTTCGAGCTGCTGGTGCTGCTGGCGCGCGAGCCGCAGAAGGTGTTCAGCCGTGACGACATCCTGATCCGCCTGCGCGG
GCAGGAGTCCGACGACCTGTTCACGCGGGCGGTCGACATCCTGGTCAGCCGGCTGCGCAAGAAGCTCGAGCCGCTCGATT
GCATCAAGACGCTGCGCAACGCGGGCTACGCCTTTGCCGGCGCCCGCCTCGTGCCGTGA

Protein sequence : 
MPRLLLIDDDEHLAAPLAAYLRRFDLDLDHAERPSLGLQRLAGGGYDAVILDVMLPEMDGFEVCREIRKTSQIPILMLTA
RGDVMDRVIGLELGADDYLPKPFEPRELAARLQTILRRQRAPAPAAAAVSTTPLVFDGLVIDLERRQVLVQGRPVELTGT
EFELLVLLAREPQKVFSRDDILIRLRGQESDDLFTRAVDILVSRLRKKLEPLDCIKTLRNAGYAFAGARLVP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-21 41
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-20 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lcho_2529 YP_001791559.1 two component transcriptional regulator CP001918.1.gene5135. Protein 3e-28 45
Lcho_2529 YP_001791559.1 two component transcriptional regulator BAC0533 Protein 9e-29 41
Lcho_2529 YP_001791559.1 two component transcriptional regulator NC_002695.1.915041.p Protein 7e-29 41
Lcho_2529 YP_001791559.1 two component transcriptional regulator CP000647.1.gene4257. Protein 9e-29 41
Lcho_2529 YP_001791559.1 two component transcriptional regulator CP000034.1.gene3834. Protein 7e-29 41
Lcho_2529 YP_001791559.1 two component transcriptional regulator CP004022.1.gene3215. Protein 1e-30 41
Lcho_2529 YP_001791559.1 two component transcriptional regulator NC_008702.1.4607594. Protein 2e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lcho_2529 YP_001791559.1 two component transcriptional regulator VFG0596 Protein 1e-21 41