Gene Information

Name : Lcho_1866 (Lcho_1866)
Accession : YP_001790898.1
Strain : Leptothrix cholodnii SP-6
Genome accession: NC_010524
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2019392 - 2020051 bp
Length : 660 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xau:Xaut_3399 two component transcriptional regulator, winged helix family

DNA sequence : 
ATGCGTTTGCTGCTGCTCGAAGACGATCTGATCCTGGGCGAGGGCCTGCGCGACTACCTGCGCACCGAGGGCCATGTGGT
CGACTGGTGCAGCCGCCTGGCCCATGCCGAGGCGCTGCGCGGCGAGCCCTACGACGCCCTGCTGGTCGACTGGCAGCTGC
CCGACGGCTCGGGCCTGGCCTGGCTGCGCGGTCGCCGCGCCCACGGCGACACCACGCCGGCGCTGATGCTGACCGCGCGC
GACCGGCTCGAAGACCGCGTGATGGGGCTCGACCAGGGCGCCGACGACTACCTCGTCAAGCCCTTCGCCCCGGAGGAACT
GGCCGCCCGCCTGCGGGCGCTGGCGCGGCGCCTGGCCAGTGCGGCGGTGCCGCGGCTGAGCTTCGGCGGCGTCGAGATCG
ACCTGCAGGCGCGCACCGCCTGGCGCGACGGCCCGCGCATCGAGCTGACCGCGCGCGAGTGGATGGTGCTCGAGGCCCTG
GCGCTGCGGGCCGGGCGCATCGTGCCCAAGCCCGACCTCGAGCGGCTGGTGCTCGGCCAGGACTCCGAGGTGGTCAGCAA
CGTGCTCGAGGTGCACATCTCCAGCCTGCGCCGCAAGCTCGGCGCGACGCTGATCGAGACCGTGCGCGGCCTCGGCTACC
GCATGGGCCAGCAGGCGTGA

Protein sequence : 
MRLLLLEDDLILGEGLRDYLRTEGHVVDWCSRLAHAEALRGEPYDALLVDWQLPDGSGLAWLRGRRAHGDTTPALMLTAR
DRLEDRVMGLDQGADDYLVKPFAPEELAARLRALARRLASAAVPRLSFGGVEIDLQARTAWRDGPRIELTAREWMVLEAL
ALRAGRIVPKPDLERLVLGQDSEVVSNVLEVHISSLRRKLGATLIETVRGLGYRMGQQA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 6e-21 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lcho_1866 YP_001790898.1 two component transcriptional regulator BAC0487 Protein 3e-19 43
Lcho_1866 YP_001790898.1 two component transcriptional regulator BAC0083 Protein 4e-17 41
Lcho_1866 YP_001790898.1 two component transcriptional regulator NC_002516.2.879194.p Protein 4e-15 41
Lcho_1866 YP_001790898.1 two component transcriptional regulator BAC0638 Protein 7e-15 41
Lcho_1866 YP_001790898.1 two component transcriptional regulator NC_002952.2859858.p0 Protein 1e-11 41
Lcho_1866 YP_001790898.1 two component transcriptional regulator NC_007622.3794948.p0 Protein 1e-11 41
Lcho_1866 YP_001790898.1 two component transcriptional regulator NC_003923.1003417.p0 Protein 1e-11 41
Lcho_1866 YP_001790898.1 two component transcriptional regulator NC_013450.8614146.p0 Protein 1e-11 41
Lcho_1866 YP_001790898.1 two component transcriptional regulator NC_002951.3238224.p0 Protein 1e-11 41
Lcho_1866 YP_001790898.1 two component transcriptional regulator NC_007793.3914065.p0 Protein 1e-11 41
Lcho_1866 YP_001790898.1 two component transcriptional regulator NC_002758.1121390.p0 Protein 1e-11 41
Lcho_1866 YP_001790898.1 two component transcriptional regulator NC_010079.5776364.p0 Protein 1e-11 41
Lcho_1866 YP_001790898.1 two component transcriptional regulator CP001918.1.gene2526. Protein 6e-13 41
Lcho_1866 YP_001790898.1 two component transcriptional regulator CP000647.1.gene1136. Protein 6e-13 41
Lcho_1866 YP_001790898.1 two component transcriptional regulator BAC0530 Protein 7e-13 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lcho_1866 YP_001790898.1 two component transcriptional regulator VFG0473 Protein 5e-22 46
Lcho_1866 YP_001790898.1 two component transcriptional regulator VFG1390 Protein 8e-13 43