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Name : Lcho_1862 (Lcho_1862) Accession : YP_001790894.1 Strain : Leptothrix cholodnii SP-6 Genome accession: NC_010524 Putative virulence/resistance : Unknown Product : RNA-binding S1 domain-containing protein Function : - COG functional category : K : Transcription COG ID : COG2183 EC number : - Position : 2013472 - 2015955 bp Length : 2484 bp Strand : + Note : PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: mpt:Mpe_A1792 putative transcription accessory protein DNA sequence : ATGGTGGGCTCGATGCACGCATCGCGGATCCGGATCGCCCATCGGGCGCCGGATTTGCCCTATGGCAAACTCCGCCGCTC CCTGCCAACCCGGCCCGTTCCGCGGGCCCAGAGCGCCTTGGACAAGATCCTTTTGCAGATTGCGGCGGAGCTCTCCGTGC GCCCCGCCCAGGTCAAGTCGGCCGTCGACCTGCTCGACAGCGGCTCCACCGTGCCCTTCATCGCGCGTTACCGCAAGGAG GCCACCGACGGCCTCGACGACACCCAGCTGCGTGACCTGGAGTCGCGCCTGGGCTACCTGCGCGAGCTCGAGGATCGCCG CGCCGCGGTGCTCAAAAGCATCGCCGAGCAGGGCAAGCTGACGCCCGAACTGCGCGCCGCCATCGAGGCCGCGCCGACCA AGCAGGAGCTCGAAGACCTCTACCTGCCCTACAAGCAGAAGCGCCGCACCAAGGGCATGATCGCCCGCGAAGCCGGCATC GAGCCGCTGGCCGACCGGCTGTTTGCCGACCCGACGCTCGACCCGCGCGCCCAGGCCGAGGCCTTCATCGCGGCCTATGA CGGCGGTGCCACCGCGCTGGCGACCGCCGGTTTTGCCGACGCGCTGGCGGTGCTCGACGGCGTGCGCGACATCCTCAGCG AGCGCTGGGCCGAAGACGCCGCGCTGGTCAAGGGCCTGCGCGAGTGGCTGTGGGACGAGGGCCTGTTCAAGTCCAAGCTG ATGGACGGCAAGGACGAGAACAACCCGGACGTCGCCAAGTTCCGCGACTACTTCGCGTATGACGAGCCCATCCGCCGCGT GCCCTCGCACCGTGCGCTGGCCGTCTTCCGCGGCCGCACGCTGGAGATCCTCGACGCCAAGCTGGCGACCGACGAGGAAC TGCAGCCCGGTCAACCCAGCCTGGCGGAGGGCAAGATCGCCATCCACCTGCGCTGGAGCCACGCCAACCGGCCCGGCGAC GCGCTGATCCGCAAGTGCGTGGCCTGGACCTGGAAGGTCAAGCTCAGCCTGAGCCTGGAGCGCGACCTGTTCACCCGCCT GCGCGAAGAGGCCGAGGCCGTCGCCATCAAGGTCTTCAGCGAGAACCTGCGCGACCTGCTGCTGGCCGCGCCGGCCGGCA AGCGGGTGGTGATGGGTCTGGATCCCGGCATCCGCACCGGCGTGAAAGTGGCGGTGGTGAGCGACACCGGCAAGGTGCTC GACACGTCCACCGTCTACCCGCACGAACCGCGGCGCGACTGGGACGGCTCGCTGCACACGCTGGCCAAGCTCTGCGCGAC GCACGGCGTGAACCTGATCGCCATCGGCAACGGCACCGCCAGCCGCGAGACCGACAAGCTGGCGGCCGACCTGATCAAGC GCATCCAGCAGCTCGCCCCCGGCACGCTGATCGACAAGGTGGTGGTCAGCGAAGCGGGTGCCTCGGTCTATTCGGCCAGC GAGTTCGCCTCGAAGGAGCTGCCGGATCTGGACGTCAGCCTGCGTGGCGCGGTCTCGATCGCCCGCCGGCTGCAGGATCC GCTGGCCGAGCTGGTCAAGATCGACCCCAAGAGCATCGGCGTCGGCCAGTACCAGCACGACGTCAACCAGGGCGAACTGG CGCGCACGCTGGGCACGGTGATCGAGGACTGCGTCAACTCGGTGGGCGTGGACCTGAACACCGCCTCGGCGCCGCTGCTG TCACGCGTGTCGGGCCTGAGCGGCACGGTGGCGGCCAGCATCGTGCGCTGGCGCGATGCCAACGGTGCGTTCCGCAACCG CAAGCAGCTGCTCGACGTGGCGGGGCTGGGCCCCAAGACCTTCGAGCAGGCGGCGGGTTTCCTGCGCATCCGCGGCGGCG ACAACCCGCTCGACATCACCGGCGTGCACCCGGAAACCTACCCGGTGGTCGAGAAGATGATCGCCGGCACCGGCCGGCCG GTGGCCGAGCTGATGGGCCGCAGCGACGTGCTGAAGACGCTCAAGCCCGAGCTGTATGCGACCGAGAAATTCGGCGCCAT CACGGTCAAGGACATCATTGCCGAGCTGGAGAAACCCGGCCGCGACCCGCGCCCGGATTTCAAGGTGGCACGTTTCAACG ACGGCGTGGAGGACATCAAGGACCTGAGCGAAGGCATGGTGCTCGAAGGCACGGTGAGCAACGTCGCGCAGTTCGGTGCC TTCATCGATCTGGGCGTGCACCAGGACGGCCTGGTGCACGTCAGCCAGCTGAGCAACAAGTTCGTCAACGACGCGCGCGA GGTGGTGAAAACCGGCGACATCGTCAAGGTGCGGGTATTGGAAGTCGACCTGGCGCGCAAACGCATTTCGCTGACGATGA AACTCGACGCGCCGGCTCAGCCCAAGGGTGCGGGCAAGGCGGCCGACAACAGTTTCAAGGCCGCCGGGCGCGGCGAACGA TTTGCGCCGCCGCCGCGCGGTGCGCAGCCGGCGCCGGCCGGTGCCCTGGCGGCGGCGTTCGCGAAACTGCAGGTCAAGAA ATGA Protein sequence : MVGSMHASRIRIAHRAPDLPYGKLRRSLPTRPVPRAQSALDKILLQIAAELSVRPAQVKSAVDLLDSGSTVPFIARYRKE ATDGLDDTQLRDLESRLGYLRELEDRRAAVLKSIAEQGKLTPELRAAIEAAPTKQELEDLYLPYKQKRRTKGMIAREAGI EPLADRLFADPTLDPRAQAEAFIAAYDGGATALATAGFADALAVLDGVRDILSERWAEDAALVKGLREWLWDEGLFKSKL MDGKDENNPDVAKFRDYFAYDEPIRRVPSHRALAVFRGRTLEILDAKLATDEELQPGQPSLAEGKIAIHLRWSHANRPGD ALIRKCVAWTWKVKLSLSLERDLFTRLREEAEAVAIKVFSENLRDLLLAAPAGKRVVMGLDPGIRTGVKVAVVSDTGKVL DTSTVYPHEPRRDWDGSLHTLAKLCATHGVNLIAIGNGTASRETDKLAADLIKRIQQLAPGTLIDKVVVSEAGASVYSAS EFASKELPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVNQGELARTLGTVIEDCVNSVGVDLNTASAPLL SRVSGLSGTVAASIVRWRDANGAFRNRKQLLDVAGLGPKTFEQAAGFLRIRGGDNPLDITGVHPETYPVVEKMIAGTGRP VAELMGRSDVLKTLKPELYATEKFGAITVKDIIAELEKPGRDPRPDFKVARFNDGVEDIKDLSEGMVLEGTVSNVAQFGA FIDLGVHQDGLVHVSQLSNKFVNDAREVVKTGDIVKVRVLEVDLARKRISLTMKLDAPAQPKGAGKAADNSFKAAGRGER FAPPPRGAQPAPAGALAAAFAKLQVKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| NMB0075 | NP_273139.1 | transcriptional accessory protein Tex | Not tested | IHT-A | Protein | 0.0 | 58 |
