Gene Information

Name : Lcho_1737 (Lcho_1737)
Accession : YP_001790769.1
Strain : Leptothrix cholodnii SP-6
Genome accession: NC_010524
Putative virulence/resistance : Virulence
Product : aldehyde dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : -
Position : 1854357 - 1855853 bp
Length : 1497 bp
Strand : -
Note : PFAM: Aldehyde Dehydrogenase_; KEGG: mpt:Mpe_A1909 putative aldehyde dehydrogenase

DNA sequence :
ATGAACAGCCCCGACACCGACTGGCACGCCCGCGCCCTGGCCCTGCGCATCGACGGCCGCGCCGTCATCGACGGCGAGCG
CCGCGACGCGCTGGCGGGCGAGACCTTCGCCTGCCATTCGCCGATCGACGGCCGCCGGCTGGCCGCGGTGGCGCGCTGCC
GCGAGGCCGATGTCGACCGCGCGGTGGCCTCGGCCCGCGCCGCCTTCGACGACGGCCGCTGGGCCCGCAAGGCACCGGCC
GAGCGCAAGAAGATCCTGCAGCGCTTCGGTGAAAAGATCCTCGCCGCGCGCGAGGAACTGGCGCTGCTCGAGACCCTAGA
CATGGGCAAGCCGATCCGCTACTCGCTCGCCGTCGACGTGCCGTCGACCGCGCGCACGATCACCTGGTACGCCGAGGCGA
TCGACAAGGTCTACGACGAGATCGCGCCCACCGGCCGCCACGCGCTGGCGCTGATCACGCGCGAGCCGATGGGCGTGATC
GGCGCCATCGTGCCCTGGAACTACCCGATGATCATGGCCGCCTGGAAGCTCGGGCCGGCGCTGGCCACCGGCAACTCGGT
GGTGATCAAGCCGAGCGAGAAGTCGCCGCTCACCGCGCTGCGGCTGGCCGAACTGGCGCTCGATGCCGGCCTGCCGCCGG
GCGTCTTCAACGCCGTGCCGGGCTACGGCCACGAGGCCGGCGAGGCGCTGGCGCTGCACATGGATGTCGACGCCATCGGC
TTCACCGGCTCGACCCGGGTGGGCCGCAAGATGCTCGAGTACGCCGGCCGCTCCAACCTCAAGCGCGTGTTCAACGAGCT
GGGCGGCAAGTCGGCGTTCATCGTCTTCCCCGACCACCAGGATCCGGCGCTGGCCGCCTGCACCGTCGCGGCCAGCCTGT
ACTTCAACCAGGGCGAGTCGTGCAATGCACCGTCGCGGGTGCTGGTGCATGAATCCATCGCCGACGACTTCGTCGCCGCG
GTGCGTGCCGAGATGCCGAAGTACGCGCCGGCCGATCCGCTCGACGCTGGCAGCGTGATGGGCGCGCTGGTCGACGAGGG
CCAGATGAACACGGTGCTCGGCTTCATCGCCTCGGCCGAGACCGAAGGCGCGGTGTGTGCAGCCGGTGGCCGCCAGGTGC
GCGCCGAGACCGGCGGCTACTACGTCGAGCCGACCTTGTTCGACCAGGTGAGCCCGCAGATGCGCATCGCCCGCGAGGAG
ATCTTCGGCCCGGTGCTGTCGGTGCTGCGCTTCTCGACCGAGGCCGAGGCCGTGGCACTCGCCAATGCCAGCCCCTACGG
TCTGCAGGCCAGCGTCTGGAGCCACGACATCAACCGTGCCCATCGCGTGGCACGCGCCTTGCGAGCCGGCACGGTCCATG
TCAACCAGTACGACGAGGACGACATCACCGTGCCGTTCGGCGGCTACAAGCAAAGTGGCAACGGCCGCGACAAGTCGCTG
CACGCGCTCGACAAGTACACCGAACTCAAGACCACCTGGCTGCGCATCGACGACTGA

Protein sequence :
MNSPDTDWHARALALRIDGRAVIDGERRDALAGETFACHSPIDGRRLAAVARCREADVDRAVASARAAFDDGRWARKAPA
ERKKILQRFGEKILAAREELALLETLDMGKPIRYSLAVDVPSTARTITWYAEAIDKVYDEIAPTGRHALALITREPMGVI
GAIVPWNYPMIMAAWKLGPALATGNSVVIKPSEKSPLTALRLAELALDAGLPPGVFNAVPGYGHEAGEALALHMDVDAIG
FTGSTRVGRKMLEYAGRSNLKRVFNELGGKSAFIVFPDHQDPALAACTVAASLYFNQGESCNAPSRVLVHESIADDFVAA
VRAEMPKYAPADPLDAGSVMGALVDEGQMNTVLGFIASAETEGAVCAAGGRQVRAETGGYYVEPTLFDQVSPQMRIAREE
IFGPVLSVLRFSTEAEAVALANASPYGLQASVWSHDINRAHRVARALRAGTVHVNQYDEDDITVPFGGYKQSGNGRDKSL
HALDKYTELKTTWLRIDD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF SG19 AAN62241.1 putative aldehyde dehydrogenase Not tested PAGI-3(SG) Protein 1e-116 59
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 2e-73 42
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 3e-74 42
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 3e-74 42
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 3e-74 42
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 8e-74 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lcho_1737 YP_001790769.1 aldehyde dehydrogenase VFG0082 Protein 1e-73 42