Gene Information

Name : Lcho_1284 (Lcho_1284)
Accession : YP_001790318.1
Strain : Leptothrix cholodnii SP-6
Genome accession: NC_010524
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1369548 - 1370243 bp
Length : 696 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A2035 ABC transporter, ATP-binding protein

DNA sequence : 
ATGAACAGGGCGACCACGGACGACCACACGGCCGAGCTGCTGCACATCCGCGGCCTCGCCAAGGCCTACGGCCGCACGCC
GGTGTTCCACGCCGTCGAGCTGCGCATGCGCCGCGGCGAGGTGGTGGCGCTGCTCGGTGAATCGGGTGTCGGCAAATCGA
GCCTGCTGAACTGCATCGCCGGGCTGGACCGGCCCGATGCCGGCTCGGTGCGCATCCTCGGCCAGGCGATCGACGCGCTC
GCCGAGCCGCAGGCCGCGGCGCTGCGGCGCGAGCAGCTGGGCTTCGTGTTCCAGGCCTTCCACGTGCTGCCGCACCTGAG
CGTGCGCCACAACGTGGCGCTGCCGTTGCTGCTGCAGGGCCTGCGCGACCCGGCCGCGATCCACGCCCGGGTCGACGCAA
TGCTGGCCGAGGTCGGCCTGGCCGGGCTGGCCGAGCGGCGCCCGCGCGAGCTGTCGGGCGGCCAGCTGCAGCGGGTGGCG
ATCGCGCGCGCGCTGGTGCACCGGCCGGCGCTGATCCTGGCCGACGAGCCCACCGGCAACCTCGATCCGGACACCGCCGC
GCAGGTGCTCGACCTGCTGTGCGCCCAGGCGCGCGACAGCGGCGCCGGCTGCCTGATCGTGACCCACTCGGCCGCGGCGG
CGGCGCGCGCCGACCGGGTGCTGCGGCTGCGCGCCGACGGCGTCGCGTCTGTCTGA

Protein sequence : 
MNRATTDDHTAELLHIRGLAKAYGRTPVFHAVELRMRRGEVVALLGESGVGKSSLLNCIAGLDRPDAGSVRILGQAIDAL
AEPQAAALRREQLGFVFQAFHVLPHLSVRHNVALPLLLQGLRDPAAIHARVDAMLAEVGLAGLAERRPRELSGGQLQRVA
IARALVHRPALILADEPTGNLDPDTAAQVLDLLCAQARDSGAGCLIVTHSAAAAARADRVLRLRADGVASV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-31 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-30 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-30 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-30 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lcho_1284 YP_001790318.1 ABC transporter-like protein NC_008702.1.4606598. Protein 8e-33 46
Lcho_1284 YP_001790318.1 ABC transporter-like protein NC_012469.1.7686878. Protein 5e-32 41