Gene Information

Name : Lcho_1203 (Lcho_1203)
Accession : YP_001790237.1
Strain : Leptothrix cholodnii SP-6
Genome accession: NC_010524
Putative virulence/resistance : Unknown
Product : short-chain dehydrogenase/reductase SDR
Function : -
COG functional category : I : Lipid transport and metabolism
COG ID : COG1028
EC number : -
Position : 1289947 - 1290744 bp
Length : 798 bp
Strand : +
Note : PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pna:Pnap_2712 short-chain dehydrogenase/reductase SDR

DNA sequence : 
ATGACTATCGCCATCGTTACTGGTGCCGCCGACGGCATCGGCTGGGCCACCGCACAACGGTTTGCAGCCGGCGGTGCCCG
CGTGGTGCTGGCTGACCTGCGTGGTGAGTCCGCCCGCGAGCGCGCTGCCGAGCTGGGCGCCGCCCACATCGGGCTGGCTT
GCGACGTGACGTCCGAAGCATCGGTCATCTCGCTGGTCGAGCAGGTGCTGTCGCAATGCGGGCGCATCGACGTGCTGGTC
AACAACGCCGGCATCGGCGACCAGGGCGGCGCCACGGTCGACCAGAGGCTCGATGCCTTCGACCGCGTGCTCGGCGTGCA
CCTGCGCGGCACCTTCCTGATGAGCCGCGAAGTGGCCCGCGTGATGCTGGCGCAGGCGCCGCTGGAGGGCCCGCACGGCT
GCCGCGGCGCGATCGTCAACATCGCCTCGATCGTCGCATCGGCCGGCATTCCGGGCCGCAACGCCTACGGGGCGGCCAAG
GCCGGCATCGTCGGCATGACGAAGGCGATGGCGGTCGAGTGGGGCCTGGCGGGTGTGCGCGTCAACGCGGTCGCGCCGGG
TTATGTGCGCACCGCGCTGGTCGAGAAGTTGCAGGCCGAGGGCCTGCTCAACACCGACGCCATCCACGCCCGCACGCCGA
TGGGCCGCATGGGCGCGCCGGCCGAGATTGCCGAGGCGATCGCCTTCCTGGCCTCGCCGCAGGCCAGCTACATCACCGGC
TCGGTGCTGCAGGTCGACGGCGGCTGGATCGCCCATGGCGGCGCGATTCCGTCGGTGCCGCCGGTGGTGGCGTCCTGA

Protein sequence : 
MTIAIVTGAADGIGWATAQRFAAGGARVVLADLRGESARERAAELGAAHIGLACDVTSEASVISLVEQVLSQCGRIDVLV
NNAGIGDQGGATVDQRLDAFDRVLGVHLRGTFLMSREVARVMLAQAPLEGPHGCRGAIVNIASIVASAGIPGRNAYGAAK
AGIVGMTKAMAVEWGLAGVRVNAVAPGYVRTALVEKLQAEGLLNTDAIHARTPMGRMGAPAEIAEAIAFLASPQASYITG
SVLQVDGGWIAHGGAIPSVPPVVAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAT96115.1 putative short-chain type regulator Not tested T-PAI Protein 3e-36 45
unnamed AAT96227.1 putative short-chain type regulator Not tested T-PAI Protein 4e-34 44
unnamed AAT96098.1 putative short-chain type regulator dehydrogenase Not tested T-PAI Protein 4e-34 44
unnamed AAT96175.1 putative short-chain type regulator Not tested T-PAI Protein 4e-34 44
unnamed AAT96054.1 putative short-chain type regulator Not tested T-PAI Protein 1e-34 44