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Name : Lcho_1181 (Lcho_1181) Accession : YP_001790215.1 Strain : Leptothrix cholodnii SP-6 Genome accession: NC_010524 Putative virulence/resistance : Virulence Product : DNA mismatch repair protein MutS Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0249 EC number : - Position : 1264891 - 1267551 bp Length : 2661 bp Strand : - Note : This protein performs the mismatch recognition step during the DNA repair process DNA sequence : ATGATGGCCCAGTACCTGCGGATCAAGCGCGAGTTCCCGGACACGCTGGTGTTCTACCGGATGGGCGACTTCTACGAGGT GTTCTTCGACGACGCCCGCCTGGCGCACCGCCTGCTCGACATCACGCTGACCACGCGCGGCCAGAGCAACGGCGAGCCGG TGGTGATGGCGGGCGTGCCGGTGCAGGCGCTCGAAAGCTACCTCGCCAAGCTGATCAAGCGCGGCCAGGCGGTGGCGATC GCCGAGCAGGTGGGCGAGGTCGGCGCCGGCAAGGGGCCGGTCGAGCGCAAGGTGGTGCGGGTGGTCACGCCCGGCACGAT CACCGACACCGAGCTGCTGGCCGAGCGCGAGGACACCCGGCTGCTGGCGATCGCGCAGACCGGCCCGGCGAGTGCGCCGC TGTATGGTCTGGCGTGGCTGGCGCTGGCCAGCGGCCAGCTCGGCCTGAGCGAATGCAGCGAGCGCGAACTGGACGCCTGG CTGGCGCGGCTGGCACCGGCCGAGGTGCTGGTGAGTGCCGAGATCGACAGCCAGCGCCGGCCCGCCGCGCTGCGCGCGCT GGCCGCGCCGCTGACCGCGCGGCCGGGCTGGCAGTTCGACAGCGCGCTGGGCGAGCGCAAGCTGCGCGAGCAGCTGCGGG TGGCGCACCTGTCGGGCTTCAACGCGCAGGATCTGAGCGCCGCGCACGCCGCCGCTGCCGCGCTGCTGAGCTTTGCCGAG CACACCCAGGGCCGTGCGCTCTCGCACGTCAACAGCCTGACGGTCGAGCGCGCCACCGACCTGCTGGAGCTGCCGCCGGC CACGCACCGCAACCTCGAGCTGATCGAGACCCTGCGCGGCGAGACGGCGCCGACGCTGCTGTCGCTGCTCGACACCTGTC GCACCGGCATGGGCAGCCGGCTGCTGCGCCACTGGCTGACGCACCCGCTGCGCGAGCGCACGGTGGCACGCGAGCGCCAC GCCGCGATCGCCGCGCTGCTCGACGCCCGCGCCGCCGAGCCGCTGCGCGAGGCGCTGCGCCACGTCAGCGACGTGCAGCG CATCACCGCCCGCACCGCGCTGCGCCAGGTGCGCCCACGTGAACTGGCCGGCCTGCGCGAAACCCTCGCCCACCTGCCGA CGCTGCGCGGCCAGGTGCCGAACGGCGCGCCGCTGCTGGCCGACCTGCACGCCGCACTCACACCCGACGCCTCGATCGCC GAGCTGCTGCAGCGCGCCGTGGCCGAAGAACCGGCCGTGCTGCTGCGTGACGGCGGGGTGATCGCGGCCGGCTTCGACGC CGACCTGGACGAGCTGCGCGCCATCGCCACCAACTGCGACGCCTTCCTGCTCGACCTGGAGGCGCGCGAACGCGAGCGCA CCGGCATCGCCAACCTGCGGGTGCAATACAACAAGGTGCACGGCTTCTACATCGAAGTCACGCAGGGTCAGGTCGACAAG GTGCCGCTCGACTACCGGCGCCGCCAGACGCTCAAGAACGCCGAGCGCTACATCACGCCCGAGCTGAAGGCCTTCGAGGA CAAGGCGCTGTCGGCGCAGGAGCGTTCGCTGGCACGCGAGAAGTGGCTCTACGAGCAGCTGCTCGACGCGCTGCAGCCGC ACCTGAACGCGCTGTCCGAGCTGGGCCGCGCACTCGCCAGCCTCGACGCGCTGGCCGCCTTTGCCGAACGCGCCGCCACG CTCGACTGGTGCGCGCCCGAGTTCGTCAACCACCCGTGCCTGGACATCGAACAGGGCCGCCACCCGGTGGTCGAGGCGCG GCTGGCGGAAACCGGCGGCGGCAACTTCATCGCCAACGACTGCCGGCTCGATTCGGCGCGCCGCATGGTGATCCTGACCG GCCCCAACATGGGCGGCAAGAGCACCTTCATGCGCCAGGTGGCGGTGATCGCGCTGCTGGCAGCGATCGGCTCGTACGTG CCGGCGGCGCGCGCGCGGCTCGGCCCGCTCGACGCCATCCACACCCGCATCGGCGCGGCCGACGACCTGGCCAACGCGCA GTCGACCTTCATGCTCGAGATGACCGAGGCCAGCGCCATCCTGCACAGCGCGAGCGAGCACTCACTTGTCCTGATGGACG AGATCGGCCGCGGCACCAGCACCTTCGACGGCCTGGCGCTGGCCGGCGCGATCGGCAGCCACCTGCACGACCGCAACAAG AGCTTCACACTGTTCGCGACGCACTATTTCGAGCTGACCGAGTTCCCGGCCCGGCACCGGCATGCCGTCAACATGCACGT GTCGGCGGCAGAGAGCGGCGACGACATCGTCTTCCTGCATGCGATCGAGGCCGGGCCGGCGAGCCGCAGCTACGGCGTGC AGGTGGCGCGGCTGGCCGGCATGCCGGGCTCGGTGCTGCGCCAGGCGCGCAACGCGCTCGACAGCCTGGAGGCCCAGCAG CGTGCCGGCCAAGCGCAGATCGACCTGTTCGCCGGGCCCGATGTCAGTCCCGAGGTCGAGGCCGCGGCACCCATATCGAT CGCGCTCACGCCGGTCTCGACACCGCAGGCCACGGCGCACGCAGCGGTTCTCGATGCACTGGCCGACGTCGAGCCCGACA ATCTGAGCCCGCGCGAGGCCCTGGCGGCACTCTATCGACTCAAGGCCCTGGCGATCGCGCCGGCGGCCGATCCATCCACC TTCACCCCTTCACGACCATGA Protein sequence : MMAQYLRIKREFPDTLVFYRMGDFYEVFFDDARLAHRLLDITLTTRGQSNGEPVVMAGVPVQALESYLAKLIKRGQAVAI AEQVGEVGAGKGPVERKVVRVVTPGTITDTELLAEREDTRLLAIAQTGPASAPLYGLAWLALASGQLGLSECSERELDAW LARLAPAEVLVSAEIDSQRRPAALRALAAPLTARPGWQFDSALGERKLREQLRVAHLSGFNAQDLSAAHAAAAALLSFAE HTQGRALSHVNSLTVERATDLLELPPATHRNLELIETLRGETAPTLLSLLDTCRTGMGSRLLRHWLTHPLRERTVARERH AAIAALLDARAAEPLREALRHVSDVQRITARTALRQVRPRELAGLRETLAHLPTLRGQVPNGAPLLADLHAALTPDASIA ELLQRAVAEEPAVLLRDGGVIAAGFDADLDELRAIATNCDAFLLDLEARERERTGIANLRVQYNKVHGFYIEVTQGQVDK VPLDYRRRQTLKNAERYITPELKAFEDKALSAQERSLAREKWLYEQLLDALQPHLNALSELGRALASLDALAAFAERAAT LDWCAPEFVNHPCLDIEQGRHPVVEARLAETGGGNFIANDCRLDSARRMVILTGPNMGGKSTFMRQVAVIALLAAIGSYV PAARARLGPLDAIHTRIGAADDLANAQSTFMLEMTEASAILHSASEHSLVLMDEIGRGTSTFDGLALAGAIGSHLHDRNK SFTLFATHYFELTEFPARHRHAVNMHVSAAESGDDIVFLHAIEAGPASRSYGVQVARLAGMPGSVLRQARNALDSLEAQQ RAGQAQIDLFAGPDVSPEVEAAAPISIALTPVSTPQATAHAAVLDALADVEPDNLSPREALAALYRLKALAIAPAADPST FTPSRP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| mutS | AAA80578.1 | DNA mismatch repair protein | Virulence | SPI-1 | Protein | 7e-149 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Lcho_1181 | YP_001790215.1 | DNA mismatch repair protein MutS | VFG0562 | Protein | 7e-168 | 50 |
