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Name : Lcho_1038 (Lcho_1038) Accession : YP_001790073.1 Strain : Leptothrix cholodnii SP-6 Genome accession: NC_010524 Putative virulence/resistance : Unknown Product : integrase catalytic subunit Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4584 EC number : - Position : 1108537 - 1110003 bp Length : 1467 bp Strand : + Note : PFAM: Integrase catalytic region; KEGG: bvi:Bcep1808_6227 integrase, catalytic region DNA sequence : TTGTCGCAGCTCTCGCACGAGCAGATCGCCAAGGCGCTCAACATCTCCAAGGGCGTCGTCTCGAAGTACGTCGGCCTGGC CAACAACGCCGGTCTGGACTGGGAGGCCGCACAGGCGCTCGACGAGCGCCAACTCACGGTCTTGCTGCTGCCACGCGCCG CGGCGGCCGGTCGCTTCGTCGAGCCCGACTGGGCCGCCGTGCACCGCGAGCTCGACCGCAAGGGCGTCACCCTGGTGCTG TTGTGGCAGGAGTACCGGGCCGCGCATGCCGAGTGCCGCACCTGGGGCTACACGCAGTTCTGCGCGCACTACAAGGACTT CGTCGCCCGCCTGAAGCGCTCGATGCGCCAGCACCGGCGCGCCGGCGAGAAGCTGTTCATCGACTTCGCGGGATCGACCA TCGCGCTGGTGGACGGCAGTCGCGCGCAGGTCTTCGTGGCGGCGATGGCCGCGTCGAGCTGCGTGTTTGCCTGCGCCACG CTGGCGCAGCGCCTGGAGGACTGGATCGAAGGCATCGTGCGCGCGTTGGCCTTCTACGGCGGGGTGCCTCAGCTCATCGT GCCGGACAACCCGCGTGCGCTGATCGCCGAGCCCGACCGCTACGAGCCACGCGCCAACGCCACCGTGCAGGACCTGTGCC GCCACTACGGATGCTCGGTGCTGCCGGCGCGACCGCGTTCACCCAAGGACAAGGCCACGGCGGAGAGCGCCGTCCAGGTC GTGACCCGATGGGTGCTGGCGCGCCTGCGGCATCAGACGTTCGCGACGGTGGCCGAGGTCGATGCCGCGATCGCCGCGCT GTTGCCGTCGGTCAACGAGCGGCCCTTCCAGCGGCTCGCCGGCAGCCGCGCCAGCGTCTTCGCCGAGCTGGACGCGCCGG CCCTGATGCCGCTGCCGGCGCAGCGCTACGAGCTCGCGCGCTTCAAGACGGTCAAGGTCCACATCGACTACCACGTCGAG ATCGAGGCCCACCGCTACTCCGTGCCGCACGCCCTGGTCGGACAAGCGCTGGAGGCACGTCTGACTCGGGCCTGCGTTGA GCTGCTGTTGCGCGGTCAGCGAGTGGCCAGCCACGCCCGCAACGAACGCCGCGGCGGCTACACCACCGTCGACGCCCACA TGCCCGCGGCGCACCGCGCCCACAAGGAATGGACCCCCGATCGCCTCATCGAATGGGGCCAGCGCATCGGCGTCTCGACC GGCGAGGTCGTCACCCGGCAGCTGCAGCTGTTCAAGCATCCCGAGCACGGCTACCGCTCCTGTCTGGGCCTGCTGAGCCT GGCCAAGCGCTACGGCGCGGCTCGCCTGGAGGCGGCCTGCGAGCGCGCCCTGGTCCTGGGCACCGTCAAGTACCGCCACG TGCGCGATCTGCTGGCCAACAACCGCGATCGGCTCCAGAACCCCGATCAGTCCGACTGGGTCAGCCCGACGCACGCCAAC GTGCGTGGCCCCGGCTACTACCAATGA Protein sequence : MSQLSHEQIAKALNISKGVVSKYVGLANNAGLDWEAAQALDERQLTVLLLPRAAAAGRFVEPDWAAVHRELDRKGVTLVL LWQEYRAAHAECRTWGYTQFCAHYKDFVARLKRSMRQHRRAGEKLFIDFAGSTIALVDGSRAQVFVAAMAASSCVFACAT LAQRLEDWIEGIVRALAFYGGVPQLIVPDNPRALIAEPDRYEPRANATVQDLCRHYGCSVLPARPRSPKDKATAESAVQV VTRWVLARLRHQTFATVAEVDAAIAALLPSVNERPFQRLAGSRASVFAELDAPALMPLPAQRYELARFKTVKVHIDYHVE IEAHRYSVPHALVGQALEARLTRACVELLLRGQRVASHARNERRGGYTTVDAHMPAAHRAHKEWTPDRLIEWGQRIGVST GEVVTRQLQLFKHPEHGYRSCLGLLSLAKRYGAARLEAACERALVLGTVKYRHVRDLLANNRDRLQNPDQSDWVSPTHAN VRGPGYYQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| APECO1_3528 | YP_854247.1 | transposase for ISEc12 | Not tested | PAI I APEC-O1 | Protein | 4e-86 | 44 |
| unnamed | CAC39294.1 | hypothetical protein | Not tested | LPA | Protein | 6e-86 | 44 |
| ORF_6 | AAZ04417.1 | putative transposase subunit | Not tested | PAI I APEC-O1 | Protein | 3e-86 | 44 |
| VPI2_0005c | ACA01822.1 | IstA | Not tested | VPI-2 | Protein | 9e-83 | 43 |
