Gene Information

Name : CLK_0108 (CLK_0108)
Accession : YP_001786059.1
Strain : Clostridium botulinum Loch Maree
Genome accession: NC_010520
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 846231 - 846914 bp
Length : 684 bp
Strand : +
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGAATTTATTGGAAGTTAAATCAATTTCTAAAACCTATGGCAGCGGTGAAGCTGCCGTACATGCATTAAAAGATATCAG
CTTTTCCGTTCAGAAAGGTGAATTTGTCGCAATAGTCGGAGAATCCGGCTCCGGCAAGAGTACACTTCTGAATATGGTAG
GTGCGCTTGATACGCCCACTTCCGGCAAGGTATTTATCGACGGTAAAGATATTTTTTCCATGAAAGATAGTAGCTTGACG
ATTTTTCGGCGCAGAAATATTGGATTTATTTTTCAGAGCTTTAATTTAATTCCAGAATTGAATGTTGAGCAAAACATCAT
ATTTCCCGTACTGCTTGATTATCAAAAGCCCGATAAAAAGTATCTTGAGGAACTACTTACGGTGCTTAATTTGAAAGAAC
GCCGCCATCATTTACCCAGTCAATTATCAGGTGGACAGCAACAACGTGTAGCAATAGGACGTGCGCTAATTACGCGGCCG
TCGCTTATACTTGCCGACGAGCCGACGGGTAATCTGGACACGCAAAACAGCAGTGAAGTGATTACTTTGCTAAAAGAAGC
TGCAAGAAAGTATCAGCAGACCATTGTTATGATTACTCATAGCCGAAGTATCGCACAGACCGCAGACCGGATACTGCAAG
TGTCCGATGGCATACTGACCGATTTAGGGAGGTGCCGCGAATGA

Protein sequence : 
MNLLEVKSISKTYGSGEAAVHALKDISFSVQKGEFVAIVGESGSGKSTLLNMVGALDTPTSGKVFIDGKDIFSMKDSSLT
IFRRRNIGFIFQSFNLIPELNVEQNIIFPVLLDYQKPDKKYLEELLTVLNLKERRHHLPSQLSGGQQQRVAIGRALITRP
SLILADEPTGNLDTQNSSEVITLLKEAARKYQQTIVMITHSRSIAQTADRILQVSDGILTDLGRCRE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-38 45
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 7e-41 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-38 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-38 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-38 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLK_0108 YP_001786059.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 2e-101 97
CLK_0108 YP_001786059.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 5e-59 54
CLK_0108 YP_001786059.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 6e-44 46
CLK_0108 YP_001786059.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 1e-36 43