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Name : clpC (CLK_2956) Accession : YP_001788851.1 Strain : Clostridium botulinum Loch Maree Genome accession: NC_010520 Putative virulence/resistance : Virulence Product : negative regulator of genetic competence MecB/ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : 3.4.21.- Position : 3838857 - 3841292 bp Length : 2436 bp Strand : - Note : identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 DNA sequence : ATGATGTTTGGAAGATTTACAGAAAGAGCTCAGAAAGTACTTATGAATGCTCAGGAAGAAGCAGAAAAATTTAAACATGG ATATGTAGGCACAGAACATATTCTTTTAGGAATTTTAATAGAAGATGGAGTAGCTAAACAATTATTAAATAATTTTAGTA TAACAGAAGATAAAGTTAGACAGTTAATAGAAAGATATGAAGGAAAAGGGGAAATGGATCTTTCTAAAAATGAGATTCCA CTTACACCAAGAACAAAAAGGTTACTTGAAATGAGTTTATTAGAAGCTAGAAATTTAAATCATAATTATATAACCCCAGA ACATATATTATTGGGATTAATAAGAGAAGCTGAAGGGGTAGCCTTTACCATTCTTTCTAATTTAGGCTTAGATGCTGAAA GATTAAAAAAAGAGTTAATAAAGAATTTATCTGGGCAAGAAACCCCTAAAGATGAAGATAGTAAAAAAAGTTCTAAAAGC TCTACTCCTACATTAGATCAATTTGGAAGAGATCTAACTGAAATGGCAGAAGAAGGGAAGGTTGACCCTGTTATTGGAAG GGATAAAGAAACCCAGAGAGTTTTAGAAATATTATGTAGAAGAACTAAGAACAATCCTTGCTTAATAGGTGAACCAGGAG TTGGAAAAACAGCAATAGCCGAAGGACTAGCTCAAAATATAATTAATGGAAATATACCAGAAATATTAAAAAGTAAAAGA GTAGTTACATTAGATTTAACATCTATGATAGCAGGGGCTAAGTATAGGGGTGAATTTGAGGATAGATTAAAGAAAATAAT GGAGGAAGTAAGAAGTTCTAAAGATACAATATTGTTTATAGATGAAATTCATACAATAGTTGGAGCTGGGGCAGCAGAAG GTGCTATAGATGCGGCAAACATATTAAAACCAGCATTAGCGAGAGGAGAAATTCAATGCATAGGTGCAACTACACTAGAT GAATATAGAAAGTATATAGAAAAGGATTCTGCTTTGGAGAGAAGATTCCAGCCTATAAACGTAGGAGAACCTACAAAAGA AGAAACAATAGAAATTTTAAAAGGATTAAGAGATAAGTATGAAGCACATCATAGAGTTAAATTTACAGATGATGCTATAT ATGCAGCAGTTAATTTATCTGATAGATATATAAGAGATAGATTTTTGCCAGATAAAGCGATAGATCTGATGGATGAAGCT GGTTCCAAGGTTAGAATACAAAATTTAATTGCACCACCAGATTTGAAGAATATAGAAGAACAACTAGATAAAGTTGTTAA AGAAAAAGAAGATGCAATAAGAGTACAGGATTTTGAAAAAGCTGCTAATTTAAGAGATAAAGAAAAAGAATTGAAAGAAA AGTTAGAAGGATTGAAAAAGGATTGGAATGCAGAAAAAGAGGGTTCTAATCTAATTGTATCAGAACAACAAATAGCAGCA GTAGTTTCAAATTGGACTAATATACCAGTTAATAAGCTTACTGAAAAGGAATCTGAAAGACTCTTAAAATTAGAAGATAT TCTTCATAATAGGGTAATTGGCCAAGAAGAAGCTATTAAATCAGTATCAAGATCTGTAAGAAGAGCAAGAGTAGGCTTGA AAGATCCAAAGAGACCAATAGGTTCATTTATATTTTTGGGACCAACAGGTGTAGGGAAAACTGAATTAACTAAAGCCTTA GCAGAAGCTATGTTTGGAAATGAAAATAATATGATTAGGGTTGACATGTCAGAATATATGGAAAAACATTCAGTATCTAG ATTAATAGGATCGCCCCCAGGATATGTAGGGCACGATGAAGGCGGTCAATTAACAGACAAGGTAAGGACAAATCCATATT CAGTTGTTTTATTTGATGAAATAGAAAAAGCTCATCCAGAAGTGTTTAATATATTACTTCAAATATTAGAAGATGGAAGG CTTACAGATGGAAAAGGAAAAACAGTAGATTTTAGAAATACTATAATCATAATGACATCTAATGTGGGAGCATCAACTAT AAGTAGGCAAAAGACATTAGGTTTTAATACCTCCATAGAAGAAGAAAGAGAAACAGAATATGAAAAAATGAAGGATAACA TTATGAATGAATTAAAACATTCATTTAGGCCAGAATTCTTAAATAGAATAGATGATATAATAGTTTTCCATCAATTAAGA GAAGAGCATATTAGAGAAATAGTTAAACTTATGCTAAAAACTGTATCAAATAGAGTCAAAGATCAAGGAATAAAATTAGA GTTTACAGAAGAAGCAGAAAAAATATTAGCAAAAGAAGGATACGATACTAATTATGGAGCGAGACCTTTAAGAAGAGCTA TAACTAAAATTGTAGAAGATAAATTGTCAGAAGAAATATTAAAGGGAAATATTAAAAAAGGTGATTCAGTTAAAGTTAAT ACAATTGAAGATGAATTAAATTTTTGTAAGATGTAA Protein sequence : MMFGRFTERAQKVLMNAQEEAEKFKHGYVGTEHILLGILIEDGVAKQLLNNFSITEDKVRQLIERYEGKGEMDLSKNEIP LTPRTKRLLEMSLLEARNLNHNYITPEHILLGLIREAEGVAFTILSNLGLDAERLKKELIKNLSGQETPKDEDSKKSSKS STPTLDQFGRDLTEMAEEGKVDPVIGRDKETQRVLEILCRRTKNNPCLIGEPGVGKTAIAEGLAQNIINGNIPEILKSKR VVTLDLTSMIAGAKYRGEFEDRLKKIMEEVRSSKDTILFIDEIHTIVGAGAAEGAIDAANILKPALARGEIQCIGATTLD EYRKYIEKDSALERRFQPINVGEPTKEETIEILKGLRDKYEAHHRVKFTDDAIYAAVNLSDRYIRDRFLPDKAIDLMDEA GSKVRIQNLIAPPDLKNIEEQLDKVVKEKEDAIRVQDFEKAANLRDKEKELKEKLEGLKKDWNAEKEGSNLIVSEQQIAA VVSNWTNIPVNKLTEKESERLLKLEDILHNRVIGQEEAIKSVSRSVRRARVGLKDPKRPIGSFIFLGPTGVGKTELTKAL AEAMFGNENNMIRVDMSEYMEKHSVSRLIGSPPGYVGHDEGGQLTDKVRTNPYSVVLFDEIEKAHPEVFNILLQILEDGR LTDGKGKTVDFRNTIIIMTSNVGASTISRQKTLGFNTSIEEERETEYEKMKDNIMNELKHSFRPEFLNRIDDIIVFHQLR EEHIREIVKLMLKTVSNRVKDQGIKLEFTEEAEKILAKEGYDTNYGARPLRRAITKIVEDKLSEEILKGNIKKGDSVKVN TIEDELNFCKM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 55 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_001788851.1 | negative regulator of genetic competence MecB/ClpC | VFG0079 | Protein | 0.0 | 59 |
| clpC | YP_001788851.1 | negative regulator of genetic competence MecB/ClpC | VFG0080 | Protein | 2e-150 | 52 |
