Gene Information

Name : CLK_3503 (CLK_3503)
Accession : YP_001785652.1
Strain : Clostridium botulinum Loch Maree
Genome accession: NC_010520
Putative virulence/resistance : Virulence
Product : ferrichrome ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 376626 - 377450 bp
Length : 825 bp
Strand : +
Note : identified by match to protein family HMM PF00005

DNA sequence :
ATGAATAGCATAAAAGTGGAAAATCTATCTATTGCTTATGATGAAAGCATAATAGTAGAAAACTTAAATGTAAGCATTCC
TAAAGGGAAAATAACAACTATTATAGGACCTAATGGATGTGGTAAATCAACTATATTAAAAACTATAGGACGTATTATGA
AACCTAAAAATGGCATGATTTATATAAATGGAGAAGATATAAAAAAGTTGTCCACAAAAGAAATTGCAAAAAAAATGGCA
ATTTTGCCTCAGAGCCCTCAATCACCTAATGGCCTTACAGTAGATGAACTTGTAGCTTATGGACGCTATCCTCATCAAAG
GGGATTGGGTAGTCTTACATCCGAGGATAAAAAAATTATAGAGTGGGCATTGGAGGCTACAAAAATTTCAGAATTTGAAC
ATAGATCTGTAGATGCTCTTTCTGGTGGACAAAGACAGAGAGTTTGGATAGCTATGGCATTAGCACAACAGACAGATTTA
ATTCTTTTAGACGAGCCAACAACTTATTTAGATTTATCTCATCAATTAGAGGTGTTAGAACTTCTATATGATTTAAATAA
AAAACAAAAGTGCTCTATAGTTATGGTAATACATGATTTAAATCTTGCGGCACGATTTGCAGATTATATGATTGCAATCC
GTAGTGGAAAAGTTATTTCCAAAGGTGTACCAGAAATTGTTATGACGTCATCTGTTTTAAGAGAAACCTTCAATATAGAT
GTGGAGATTGTAAAGGATCCCCGTACACATAGGCCAGTTTGTATTACTTATGATTTAATTAAAGCAGACAATATACAGGA
AGTAAGGAGAGTGAGATACAGTTGA

Protein sequence :
MNSIKVENLSIAYDESIIVENLNVSIPKGKITTIIGPNGCGKSTILKTIGRIMKPKNGMIYINGEDIKKLSTKEIAKKMA
ILPQSPQSPNGLTVDELVAYGRYPHQRGLGSLTSEDKKIIEWALEATKISEFEHRSVDALSGGQRQRVWIAMALAQQTDL
ILLDEPTTYLDLSHQLEVLELLYDLNKKQKCSIVMVIHDLNLAARFADYMIAIRSGKVISKGVPEIVMTSSVLRETFNID
VEIVKDPRTHRPVCITYDLIKADNIQEVRRVRYS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 1e-59 47
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 1e-59 47
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 6e-57 47
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 6e-57 47
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 6e-57 47
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 6e-57 47
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-54 44
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-55 43
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-55 43
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-55 43
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-55 43
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-55 43
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 5e-56 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLK_3503 YP_001785652.1 ferrichrome ABC transporter ATP-binding protein BAC0164 Protein 3e-56 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLK_3503 YP_001785652.1 ferrichrome ABC transporter ATP-binding protein VFG0925 Protein 6e-56 44
CLK_3503 YP_001785652.1 ferrichrome ABC transporter ATP-binding protein VFG1042 Protein 3e-56 42