Gene Information

Name : fliQ (CLK_2035)
Accession : YP_001787968.1
Strain : Clostridium botulinum Loch Maree
Genome accession: NC_010520
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliQ
Function : -
COG functional category : N : Cell motility
COG ID : COG1987
EC number : -
Position : 2862823 - 2863092 bp
Length : 270 bp
Strand : -
Note : identified by match to protein family HMM PF01313; match to protein family HMM TIGR01402

DNA sequence : 
ATGAGCGAAAATATGGTTATGGGTATTATAAAAGATGCTATTCAAACAGGTCTTTTAGTATCTGCTCCTATTTTGACAAT
ATCTATATTAGTAGGTCTTATAATAAGTATATTTCAGGCTACAACACAGATTCAGGAACAGACATTGACTTTTGTTCCAA
AGCTTATAGCTGTGGCTTTAGTAGGTCTTTTAACTGGTAGCTGGATGTTACATCAATTATTAGCTTTTACAGAAAGAATT
TTTGCAATGATAACTCAGATTATAAAGTGA

Protein sequence : 
MSENMVMGIIKDAIQTGLLVSAPILTISILVGLIISIFQATTQIQEQTLTFVPKLIAVALVGLLTGSWMLHQLLAFTERI
FAMITQIIK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
escS AFO66341.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 4e-05 43
escS AFO66401.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 4e-05 43
escS YP_003223489.1 T3SS structure protein EscS Virulence LEE Protein 1e-04 42
escS YP_003232139.1 T3SS structure protein EscS Virulence LEE Protein 1e-04 42
escS AAK26701.1 EscS Virulence LEE Protein 7e-05 42
escS AAL57528.1 EscS Virulence LEE Protein 7e-05 42
escS CAC81848.1 EscS protein Virulence LEE II Protein 7e-05 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliQ YP_001787968.1 flagellar biosynthesis protein FliQ VFG2495 Protein 3e-07 45
fliQ YP_001787968.1 flagellar biosynthesis protein FliQ VFG0395 Protein 2e-06 42