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Name : CLK_1539 (CLK_1539) Accession : YP_001787476.1 Strain : Clostridium botulinum Loch Maree Genome accession: NC_010520 Putative virulence/resistance : Unknown Product : type I site-specific deoxyribonuclease HsdR family subfamily Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 2345730 - 2348480 bp Length : 2751 bp Strand : - Note : identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348 DNA sequence : ATGGCATACCAAAGCGAAGCAGAGCTTGAGAAACAGTTAATAAAGCAGCTTGAAAGTAAAGGTTACAATAAGGTTAAAAT AAGCACTGAAGAAGAGTTAATCAAAAATTTCAGAGTACAACTTAACAAATATAATGAGGAAAAACTTGCAGGTACACCTT TAACAGATAAAGAATTTGAACGTGTTATGCGTAAGGTTGAAGGTAAAAGTATATTTGAAGGTGCAAAAATTTTAAGAGAT AAATGGCCTTTAAAAAGGGATGATGGGTTAGAAGTTTACATAGAATTTTTTAATTCTAAATCTTTGTGTAAAAACATATT CCAAGTAACTACTCAAACAACAGTAGTAGGAAAATATACTAATAGATATGATGTAACATTATTAGTTAATGGACTTCCAC TTGTTCAAATAGAATTAAAGAGAAGAGGAGTAGACTTTAAAGAAGCCTTTAATCAAATACAGCGTTATAGAAAACACTCC TATCAAGGTTTATATAGATACATACAAATATTTATAGTAAGTAATGGTATGGATACAAAATATTTTTCCAATAGCGACAG AGATATTTTATATACTCATACCTTCTTTTGGACAGATGAAAAAAATCAAAGAATTAGTAAATTAAATGATTTTACAGATA CATTTTTAGAAAGAAGTTTTATTTCTAAAATTATTGCTCGTTACATGATAATAAATTATACAGAAAAGATACTAATGGTA ATGAGACCATACCAAATATATGCTGTAGAAGCTCTTATAAATAGAGCATTAGAGACAAATGGCAACGGATATATATGGCA CACAACAGGAAGCGGTAAAACTTTAACTTCATTTAAAGCAAGTCAGATACTTTCAAAAGAGCCTAAGATAAAGAAAGTAT TTTTTCTTGTGGATCGTAAAGATTTAGATTCCCAAACTATAAATGAATTTAATAAATTCGAACCAAAATCAGTAGATGTT ACAGATAAGACAAGCACTTTAATAAAGCAAATAAAAGACGTAAACAAACCTCTTATAGTAACTACTATACAAAAGATGGC CAATGCTATAAAGTCGCCTAGATACACAAAGATAATGGAGCAATACAAAGATGAAAAAGTTGCATTTATTATAGATGAGT GTCATAGATCACAGTTTGGAAGTATGCATATAGCTATTGAAAAGCATTTTAAAAAGGCTCAATATTTTGGATTTACAGGA ACACCTATACTTAAAGAAAATAAAAGTCAAGATGGTCGTACTACAGCAGATTTGTTTGATGAAATGCTTCATAGTTATCT TATTAAAGATGCTATAAAAGATAATAATGTTTTAGGATTTTCTGTTGAATATATATCCACTTTTAAAGGTCAATTTGATG AAAATGATGACACTAAAGTAAAGGCTATTGATAAAAAAGAAGCTTTTATGGATGATGAGCGTATATCACAAATTGCACAG GACATAATTAAAAATCATAATAAGAAAACAAAAGATAGACAATATACAGCTATATTTGCAGTTGAAAGTATTGAAATGCT TGTAAAATATTATGATAAGTTTAAAAAATTAGATCATAACTTAAAAATAACAGGCATATTTAGTTATGGAGTAAATGAAG ACGCAGAAGGGAAAGATGAACATTCAAGAGATAGCTTGGAGGAAATAATTAAAGATTATAATGAAATGTTTGATACAAAG TATTCTACGGATACATTCCAAGGGTATTTTGCTAATGTATCTAAAAAAGTTAAATCAGGACAAATTGATATACTTATAGT TGTAAATATGTTTTTAACAGGATTTGATAGCAAAACATTAAACACACTATATATAGATAAAAATTTAGCATATCATTCAT TAATACAAGCTTATTCAAGAACTAACAGAGTTTACAAATCTACAAAGCCTTATGGAAATATTGTGTGTTATAGAAATTTA AAGAAAAAGACAGATGAGGCTATAAAATTATTTTCATTAACAGATAATGCTAATGAAGTTCTTATGAAAAGTTATAATCA CTACTTAGAAGCTTTTAAAGAGAGTGTACTAAACTTATATAAGATAGTTCCAAGACCAGAAGATGTGGATTTTATTGAAG GTGAAAAAGAGAAAAAAGAATTTATAGTAGCTTTTAGAGAGTTATCTAAAATACTTATAAAATTACAAACCTTTGTAGAA TTTGAATTTGATGAAGATAAACTTTTAATTAGTGAACAAACTTATCAAGATTTTAAAAGTAAGTATTTGGCTATTTATGA TTCATTTAAAAATGATGAAGAGGGAAAAGCTTCTATTTTAGATGATATTGATTTTGGCATTGAGCTTATGCATACAGATA AAATAAATGTAGACTATATAATGAATTTAATAAGAAATATAGATTTTTCTGATAAAGAAAATAAAGAAAAAGATATAAAA CATATTATTAAGGAATTAGATAGGGCAGATAGTGAACATTTAAGATTAAAGGTAGATTTATTAAAATCATTCCTTCAAGA AGTAGTTCCAAATCTTACTGAAGAAGATTCTATTGATGATGCTTATAGTAGGTTTGAACAAGTTCAAAGAACTGAAGAAA TAAAAGCATTCTCAGAGCAAGCAGCAGTTAAAGAGGGCAAACTTAAAGATTACATTTCAGAATATGAATACAGCGGAATG TTAGATCGCAAAGATATGGGTGATACTATAGAGGGATCATTTTTAAAGAGAAAAAAAGTAGTAAACAAAATAACTACTTT TATTAAAAATCATGTAGAGAAATTTAGCTAG Protein sequence : MAYQSEAELEKQLIKQLESKGYNKVKISTEEELIKNFRVQLNKYNEEKLAGTPLTDKEFERVMRKVEGKSIFEGAKILRD KWPLKRDDGLEVYIEFFNSKSLCKNIFQVTTQTTVVGKYTNRYDVTLLVNGLPLVQIELKRRGVDFKEAFNQIQRYRKHS YQGLYRYIQIFIVSNGMDTKYFSNSDRDILYTHTFFWTDEKNQRISKLNDFTDTFLERSFISKIIARYMIINYTEKILMV MRPYQIYAVEALINRALETNGNGYIWHTTGSGKTLTSFKASQILSKEPKIKKVFFLVDRKDLDSQTINEFNKFEPKSVDV TDKTSTLIKQIKDVNKPLIVTTIQKMANAIKSPRYTKIMEQYKDEKVAFIIDECHRSQFGSMHIAIEKHFKKAQYFGFTG TPILKENKSQDGRTTADLFDEMLHSYLIKDAIKDNNVLGFSVEYISTFKGQFDENDDTKVKAIDKKEAFMDDERISQIAQ DIIKNHNKKTKDRQYTAIFAVESIEMLVKYYDKFKKLDHNLKITGIFSYGVNEDAEGKDEHSRDSLEEIIKDYNEMFDTK YSTDTFQGYFANVSKKVKSGQIDILIVVNMFLTGFDSKTLNTLYIDKNLAYHSLIQAYSRTNRVYKSTKPYGNIVCYRNL KKKTDEAIKLFSLTDNANEVLMKSYNHYLEAFKESVLNLYKIVPRPEDVDFIEGEKEKKEFIVAFRELSKILIKLQTFVE FEFDEDKLLISEQTYQDFKSKYLAIYDSFKNDEEGKASILDDIDFGIELMHTDKINVDYIMNLIRNIDFSDKENKEKDIK HIIKELDRADSEHLRLKVDLLKSFLQEVVPNLTEEDSIDDAYSRFEQVQRTEEIKAFSEQAAVKEGKLKDYISEYEYSGM LDRKDMGDTIEGSFLKRKKVVNKITTFIKNHVEKFS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0054 | YP_300144.1 | type I site-specific restriction-modification system restriction subunit | Not tested | SCC15305cap | Protein | 0.0 | 56 |
