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Name : lysS (HSM_0524) Accession : YP_001783868.1 Strain : Haemophilus somnus 2336 Genome accession: NC_010519 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 600962 - 602470 bp Length : 1509 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGACAGAAATAATTCAAGAATTGGATCTCAATGGCGAAATGTTGGTTCGTCGTGAAAAATTAGCTGCGTTAAGAGCAAA AGGCAACGCCTTTCCAAATACATTCCGTCGCAATGCTTTAGCACAGGACTTACATACACAATATGATGAAATTGAAAGTG AGAGCTTAAAAACACAGGGAATTGAAGTAAAAGTGGCGGGGCGTATTATGACTCGTCGTGTCATGGGTAAAGCAACCTTT ATCACATTGCAAGACATGAGCGGAAAAATTCAACTTTATGTTGCTCGTGATAACCTAGCTGAAGGTGTTTATACTGATGA TGTGGGCAATTGGGATTTAGGGGATATTGTTGGTGTAAAAGGTACTTTATTTAAAACTAAAACCAATGAGTTGACAATAC GTGCAACGGAAGTTCACTTATTAACTAAAGCATTACGCCCGCTTCCTAATAAATTTCATGGACTGAGCGATCAAGAAACT CGTTACCGTCAACGCTACTTAGATTTAATTGCTAATGAAGATTCACGCCGCACTTTTATTATTCGATCTAAAGTAATCGC AGGCATTCGTGAATATTTCATTTCCAAGGGATTTATGGAAGTAGAAACCCCTATGTTACAAATTATTCCGGGTGGTGCAT CTGCACGTCCATTTATTACTCATCACAATGCGTTAGATGTGGATATGTATTTACGTATTGCACCTGAACTTTATTTAAAA CGTTTGGTAGTTGGCGGTTTTGAACGTGTATTCGAGTTAAATCGTAACTTCCGCAATGAAGGTGTTTCTATTCGCCATAA CCCTGAATTTACTATGTTGGAATACTACCAAGCCTATGCGGATTACCACGATTTAATGGACAATACAGAAGAACTTTTAC GCAAATTAGCACTGGATATTTTAGGTACGACCATTGTTCCTTACGGCGATTTAAAATTCGATTTCGGCAAACCGTTTGAA CGTATTACCATGCACGAGGCAATCTTAAAATACGGTGCCGAGCAAGGTATTGTGAAAGAAGATTTATACGATTTCGATCG TGCTGTTGCAGTAGCACAAAAATTGGGTATCGAAGTACAAAAATCATGGGGGCTAGGTAGCTTAGTCAATGCAATTTTTG AAGAAGTTGCTGAACATCATTTAATTCAACCAACTTTCTTAATGGCTCATCCGGCAGAAATCTCCCCTTTAGCACGCCGC AATGATGAAAATCCTGACGTAACAGACCGCTTTGAATTATTTATCGGAGGACGTGAGATCGGTAACGGTTTCTCAGAATT AAATGATGCAGAAGATCAAAATGAGCGTTTTGATGCACAGGTTGCAGCAAAAGAAGCTGGTGACGATGAAGCTATGTTTA AAGATGAAGATTTTGTTACCGCACTTGAGCATGGATTGCCACCAACGGCTGGTGAGGGTTTAGGAATTGATCGTCTAGCG ATGTTATTTGCCAACGCTAACTCAATTCGTGATGTAATTTTATTTCCAGCAATGAAAACAAAAAGTTAA Protein sequence : MTEIIQELDLNGEMLVRREKLAALRAKGNAFPNTFRRNALAQDLHTQYDEIESESLKTQGIEVKVAGRIMTRRVMGKATF ITLQDMSGKIQLYVARDNLAEGVYTDDVGNWDLGDIVGVKGTLFKTKTNELTIRATEVHLLTKALRPLPNKFHGLSDQET RYRQRYLDLIANEDSRRTFIIRSKVIAGIREYFISKGFMEVETPMLQIIPGGASARPFITHHNALDVDMYLRIAPELYLK RLVVGGFERVFELNRNFRNEGVSIRHNPEFTMLEYYQAYADYHDLMDNTEELLRKLALDILGTTIVPYGDLKFDFGKPFE RITMHEAILKYGAEQGIVKEDLYDFDRAVAVAQKLGIEVQKSWGLGSLVNAIFEEVAEHHLIQPTFLMAHPAEISPLARR NDENPDVTDRFELFIGGREIGNGFSELNDAEDQNERFDAQVAAKEAGDDEAMFKDEDFVTALEHGLPPTAGEGLGIDRLA MLFANANSIRDVILFPAMKTKS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 6e-154 | 64 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001783868.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-154 | 64 |
