Gene Information

Name : HSM_0199 (HSM_0199)
Accession : YP_001783550.1
Strain : Haemophilus somnus 2336
Genome accession: NC_010519
Putative virulence/resistance : Virulence
Product : periplasmic solute binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 208519 - 209400 bp
Length : 882 bp
Strand : -
Note : PFAM: periplasmic solute binding protein; KEGG: hso:HS_0328 chelated iron ABC transporter periplasmic-binding protein

DNA sequence : 
ATGTCACGTTTACTTATTGTTATGGGTGTAATCTTAGGTTCTGTATTCAGTTTACCAAGTTACGCAAAATTTAAAGTAGT
TACTACTTTTACCGTTATTCAAGATATCGCTCAGAATGTTGCTGGTGATGCTGCTGTTGTTGAGTCGATCACTGAGCCGG
GTGCAGAAATTCATGATTATGAACCAACTCCACAAGACATCGTAAAAGCACAATCTGCTGATTTGGTGCTTTGGAATGGA
ATGAATTTAGAGCGTTGGTTCGAGCGTTTCTTTACCCAAGTGAAAGATAAACCAGCTGTTGTTGTAACTAAAGGGATTGA
TCCAATTTCTATCTACGAAGGTCCATACAAAGGTATGCCGAATCCACATGCTTGGATGTCAACCAAAAATGCTTTGGTAT
ACATCGAAAACATTCGTGAAGCTTTAGTGAAATACGATCCTAAAAATGCAGACACTTACAATGCTAATGCAAAAGCCTAT
GCAGATAAAATCGTTGCTTTAGACGCACCATTACGTGCCGAGTTAGAAAAAGTACCAGCTTCACAACGTTGGTTAGTAAC
CAGTGAAGGTGCATTCAGCTACTTAGCTCACGACTACGGTTTCAAAGAGCTTTATTTATGGCCTATCAATGCTGAAGAAC
AAGGCACACCAAAACAAATCAAAAATGTAATCAAAAAAGTACGTGAACACAAAATCCCTGTTGTGTTCAGCGAAAGCACC
ATTTCTGATAAGCCAGCAAAACAAGTGGCTAAAGAAACCAATGCAAAATACGGTGGTGTACTTTATGTAGATTCACTTTC
TACAAAAGATGGTAAAGTACCAACTTACATCGACTTATTAAATGTAACTGTTTCGACCATTGTGAATGGTTTCAAAAAAT
AA

Protein sequence : 
MSRLLIVMGVILGSVFSLPSYAKFKVVTTFTVIQDIAQNVAGDAAVVESITEPGAEIHDYEPTPQDIVKAQSADLVLWNG
MNLERWFERFFTQVKDKPAVVVTKGIDPISIYEGPYKGMPNPHAWMSTKNALVYIENIREALVKYDPKNADTYNANAKAY
ADKIVALDAPLRAELEKVPASQRWLVTSEGAFSYLAHDYGFKELYLWPINAEEQGTPKQIKNVIKKVREHKIPVVFSEST
ISDKPAKQVAKETNAKYGGVLYVDSLSTKDGKVPTYIDLLNVTVSTIVNGFKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 3e-93 64
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 3e-93 64
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 3e-93 64
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 3e-93 64
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-93 63

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HSM_0199 YP_001783550.1 periplasmic solute binding protein BAC0439 Protein 3e-99 76
HSM_0199 YP_001783550.1 periplasmic solute binding protein BAC0349 Protein 2e-93 64

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HSM_0199 YP_001783550.1 periplasmic solute binding protein VFG0525 Protein 1e-93 64