Gene Information

Name : HSM_0198 (HSM_0198)
Accession : YP_001783549.1
Strain : Haemophilus somnus 2336
Genome accession: NC_010519
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 207751 - 208509 bp
Length : 759 bp
Strand : -
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: hso:HS_0327 iron ABC transporter ATP-binding protein

DNA sequence : 
ATGAAAACTCACATCAGTTCTCTTTCTGTCAGAGATATTACGGTTCGTTATAGTAATGGTCATACGGCGTTGCACGATGT
GAGTTTCCACCTTGAAGGTGGTACGATTTGTGCATTGCTCGGTATTAACGGAAGTGGAAAATCGACTTTATTCAAAAGCA
TTATGGGCTTAGTGAAGCCTCAAGGTTCAATTGAAATTTGTAACATGCCCGCTAATCAGGCATTAAAACAAAACTTAGTT
GCCTATGTACCGCAAAGTGAAGAAGTGGATTGGCAGTTCCCCGTTTCTGTTTATGACGTTGTAATGATGGGGCGTTATGG
TTATATGAATTGCTTTCGTATGCCTAAAGCACAAGACAAGAAAAAAGTTTTAGACGCAATGGAGCGAGTCAATATTGCTC
ATTTGCGAGATCGACAAATCGGCGAGCTTTCTGGAGGGCAAAAAAAACGAGTATTTCTTGCTCGTGCATTAGCACAAGAA
AGCCAAATCATTTTATTAGATGAACCTTTCACTGGTGTAGATGTTGGCACAGAAAATGCCATCATTGCGTTACTCAAACA
GCTTCGTCAGGAAGGTCATCTCGTTCTCGTCTCAACGCATAATCTTAGCACCGTGCCAAGTTTTTGCGATCAAGCGGTGA
TGATCAACCGTACACTACTCGCTGCTGGATCAATCGAAAGCACTTTTACTCAAGAAAATTTAACTCGTGTGTTTGGTGGC
GTTTTACGTTATCAACATTTTATTCAAGATGCGGAGTAA

Protein sequence : 
MKTHISSLSVRDITVRYSNGHTALHDVSFHLEGGTICALLGINGSGKSTLFKSIMGLVKPQGSIEICNMPANQALKQNLV
AYVPQSEEVDWQFPVSVYDVVMMGRYGYMNCFRMPKAQDKKKVLDAMERVNIAHLRDRQIGELSGGQKKRVFLARALAQE
SQIILLDEPFTGVDVGTENAIIALLKQLRQEGHLVLVSTHNLSTVPSFCDQAVMINRTLLAAGSIESTFTQENLTRVFGG
VLRYQHFIQDAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 2e-68 63
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 4e-69 63
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-69 63
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 3e-69 63
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 2e-68 63

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HSM_0198 YP_001783549.1 ABC transporter BAC0440 Protein 2e-79 68
HSM_0198 YP_001783549.1 ABC transporter BAC0350 Protein 2e-69 63
HSM_0198 YP_001783549.1 ABC transporter BAC0400 Protein 3e-44 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HSM_0198 YP_001783549.1 ABC transporter VFG0526 Protein 2e-69 63