Gene Information

Name : HSM_0197 (HSM_0197)
Accession : YP_001783548.1
Strain : Haemophilus somnus 2336
Genome accession: NC_010519
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 206856 - 207746 bp
Length : 891 bp
Strand : -
Note : PFAM: transporter permease; ABC-3 protein; KEGG: hso:HS_0326 chelated iron ABC transporter permease

DNA sequence :
ATGTTAGAGCTATTACTTGAGCCGTTTTCTTATGATTTTATGTTTAAGGCGATTGTGGTCAGTGGTGCCATTGGAGCGGT
TTGTGCTTTTCTTTCCGCTTATTTAATGCTGAAAGGTTGGTCACTGATCGGTGATGCGTTATCCCACGCCGTTGTCCCAG
GCGTTGCTATTGCCTATGCCTTGGCATTACCTTATGCCGTCGGGGCTTTTTTCTCTGGGCTACTTGCCACTATTGCCATT
TTAGCAGTGAAATACGTGACTAAACTCAAAGAGGATGCAGTAATCGGTTTTATTTTCACCTCTTTCTTCGCTCTCGGATT
GTTGATTATTTCAATTAATCCCACTTCCGTGAACGTACAATCTATCGTTTTGGGCAATATTTTAGGTATTGCCGATGAAG
ATATGATCCAAGTCGCTATTATTCTCGGTATATCATTTGTATTGTTGCTACTCTTTTGGAAAGACCTAATGCTTGTGTTC
TTTGATGAAATTCAAGCCAAAGCGGTAGGGCTATCGCCTTTAAAATTCAAAATTTTATTCTTTACCTTGTTAAGTGCATG
CATTGTAACCGCCTTACAAGGAGTAGGGGCTATTTTGGTAATTGCGATGGTGATTACACCTGGAGCAACAGCATATTTGC
TCACCGATCGCTTCGATCGCCTGTTGATTATTTCGATTTTACTCGGTGGTACTACTAGCTCACTAGGAGCATATTTGAGT
TATTTCGCAGACAGTGCAACTGGTGGCTTTATTGTATCATTGCAAACGTTCATCTTCTTACTTGCTTTCTTTTTTGCTCC
CAAATATGGTCTTATTCCACGTAAGCGAAGTACACAAAAAGCAGTGACTTCCTCACCAAATCTTGCAAATCAGGAGAAGC
CAAATGTTTAA

Protein sequence :
MLELLLEPFSYDFMFKAIVVSGAIGAVCAFLSAYLMLKGWSLIGDALSHAVVPGVAIAYALALPYAVGAFFSGLLATIAI
LAVKYVTKLKEDAVIGFIFTSFFALGLLIISINPTSVNVQSIVLGNILGIADEDMIQVAIILGISFVLLLLFWKDLMLVF
FDEIQAKAVGLSPLKFKILFFTLLSACIVTALQGVGAILVIAMVITPGATAYLLTDRFDRLLIISILLGGTTSSLGAYLS
YFADSATGGFIVSLQTFIFLLAFFFAPKYGLIPRKRSTQKAVTSSPNLANQEKPNV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-72 59
sitC NP_461784.1 permease Virulence SPI-1 Protein 6e-72 59
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 5e-72 59
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 5e-72 59
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 5e-72 59
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-41 42
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-41 42
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-41 41
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-41 41
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-41 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HSM_0197 YP_001783548.1 ABC transporter BAC0441 Protein 2e-87 68
HSM_0197 YP_001783548.1 ABC transporter BAC0351 Protein 3e-72 59
HSM_0197 YP_001783548.1 ABC transporter BAC0352 Protein 8e-42 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HSM_0197 YP_001783548.1 ABC transporter VFG0527 Protein 3e-72 59
HSM_0197 YP_001783548.1 ABC transporter VFG0528 Protein 7e-42 42