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Name : HSM_1560 (HSM_1560) Accession : YP_001784880.1 Strain : Haemophilus somnus 2336 Genome accession: NC_010519 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 1794935 - 1796224 bp Length : 1290 bp Strand : + Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGATTGATCCAACTTTATTACGCAATAATCTTTCTGAAATTGCGGAAAAATTAAAAGTAAGACGTGGCTTTATTCTCGA CGTAGATAAATTTTCACAATTAGAAGAACAACGTAAGACTTTACAAATTAAAACGGAAACTTTACAAGCCGAACGTAACT CTCGCTCAAAAACAATTGGTGCGGCAAAAGCTAGAGGAGAAGATATTTCTACTTTATTGGCAGAAGTTGATCATATGGGA GCCGAATTAAATACTGTCAAAGAAGAATTAGCGAATGTATTAACGGAAATTGAGCAATTGGCATTAACAATTCCCAATAT TCCTGCTGATGAAGTACCTTTAGGAAAAGATGATTCTGATAATAAAGAAGTTTTTCGTTGGGGAACACCAAAAAAATTTG ATTTCGAAGTGAAAGATCATGTTGCCTTAGGGGAAATATTAGGTGGGTTAGATTTTGCTGCTGGTGTTAAATTAAGTGGT GCTCGTTTTGCCGTAATAAAAGGGCAAATTGCAAGAATGCATCGAGCCTTGGCACAGTTTATGCTAGATTTACATACTGA GCAACATGGCTATACAGAGGCTTATGTACCTTATTTAGTCAATCATACAACACTTTATGGAACGGGGCAGTTACCAAAAT TTGGTGAGGAGTTATTTCATATAAAACCCCTAGAAAATGAACAGACTTATGCGTTAATCCCTACCGCCGAAGTGCCTGTA ACAAACTTAGTTCGAGATGAAATCATCGATGAAGCTGATTTACCAATAAAAATGACCGCACATACGCCTTGTTTCCGTTC TGAAGCAGGTTCTTACGGTCGTGATACTCGAGGTTTAATCCGTATGCATCAATTTGATAAGGTTGAATTAGTACAAATTG TTGAACCGGAAAAATCAATGGAAGCACTGGAAGAATTGACAAATCAGGCAGAAAAAGTATTACAACTTTTAAATTTACCT TATCGTAAAGTTTTATTGTGTACAGGCGACATGGGATTCGGAGCTACTAAAACATATGATTTGGAAGTGTGGATTCCGGC ACAAAATACGTATCGTGAGATTTCTTCTTGCTCAAATATGTGGGATTTCCAAGCACGTCGTATGCAAGCCCGTTGTCGTG CAAAAGGCGATAAAAAAACACGCTTAGTACATACTTTAAATGGATCGGGACTAGCTGTTGGCCGCACTTTAGTTGCCATT CTTGAAAATTATCAAAATGCAGATGGCTCTATTACCGTACCGGAAGTATTACGCCCTTATATGAATGGAATAGAAATTAT TGGTAAATAA Protein sequence : MIDPTLLRNNLSEIAEKLKVRRGFILDVDKFSQLEEQRKTLQIKTETLQAERNSRSKTIGAAKARGEDISTLLAEVDHMG AELNTVKEELANVLTEIEQLALTIPNIPADEVPLGKDDSDNKEVFRWGTPKKFDFEVKDHVALGEILGGLDFAAGVKLSG ARFAVIKGQIARMHRALAQFMLDLHTEQHGYTEAYVPYLVNHTTLYGTGQLPKFGEELFHIKPLENEQTYALIPTAEVPV TNLVRDEIIDEADLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQIVEPEKSMEALEELTNQAEKVLQLLNLP YRKVLLCTGDMGFGATKTYDLEVWIPAQNTYREISSCSNMWDFQARRMQARCRAKGDKKTRLVHTLNGSGLAVGRTLVAI LENYQNADGSITVPEVLRPYMNGIEIIGK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 1e-107 | 56 |
