Gene Information

Name : CLD_0056 (CLD_0056)
Accession : YP_001780339.1
Strain : Clostridium botulinum Okra
Genome accession: NC_010516
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 829969 - 830652 bp
Length : 684 bp
Strand : +
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGAATTTATTGGAAGTTAGATCAATTTCTAAAACCTATGGTAGCGGTGAAGCTGCCGTACATGCATTAAAAGATATCAG
CTTTTTCGTTCCGAAAGGCGAATTTGTCGCAATAGTCGGGGAATCAGGCTCCGGCAAGAGTACACTTCTGAATATGATAG
GGGCGCTTGATATGCCCACCTCCGGCAAAGTATTTATTGACGGTAAAGATATTTTTTCAATGAAAGATAGTAACCTGACA
ATCTTTAGGCGTAGAAATATTGGATTTATTTTTCAGAATTTTAATCTAATTCCAGAATTGAATGTTGAGCAAAACATCAT
ATTTCCCGTACTGCTTGATTATCAAAAGCCCGATAAAAAGTATCTTGAGGAACTACTTACGGTGCTTAATTTGAAAGAAC
GCCGTCACCATTTACCCAGTCAATTATCAGGTGGCCAGCAACAGCGTGTAGCAATAGGACGTGCACTAATTACGCGGCCT
TCACTTATCCTTGCCGATGAGCCGACGGGTAATTTAGATACGCAAAACAGCAGTGAAGTGATTACTTTGCTAAAAGAAGC
TGCAAGAAAGTACCAGCAGACCATTGTTATGATTACCCATAGCCGAAGTATCGCACAGACTGCAGATCGAATAATACAAG
TGTCTGATGGCATACTGACCGATTTAGGGAGGTGCCGCGAATGA

Protein sequence : 
MNLLEVRSISKTYGSGEAAVHALKDISFFVPKGEFVAIVGESGSGKSTLLNMIGALDMPTSGKVFIDGKDIFSMKDSNLT
IFRRRNIGFIFQNFNLIPELNVEQNIIFPVLLDYQKPDKKYLEELLTVLNLKERRHHLPSQLSGGQQQRVAIGRALITRP
SLILADEPTGNLDTQNSSEVITLLKEAARKYQQTIVMITHSRSIAQTADRIIQVSDGILTDLGRCRE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-37 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-38 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-38 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-38 44
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 5e-39 43
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 6e-26 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLD_0056 YP_001780339.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 2e-104 99
CLD_0056 YP_001780339.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 8e-58 54
CLD_0056 YP_001780339.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 5e-43 46
CLD_0056 YP_001780339.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 4e-35 42