Gene Information

Name : CLD_0478 (CLD_0478)
Accession : YP_001779926.1
Strain : Clostridium botulinum Okra
Genome accession: NC_010516
Putative virulence/resistance : Virulence
Product : peptide ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 350441 - 351211 bp
Length : 771 bp
Strand : +
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGTCAATTTTAAAAGTTGAAAATATAACAAAAATATATGGTGGAAAAAAGGGTGGAATGAAATTTAAAGCGCTAGATAA
GTTTAGTTTAGAAATTGAAAAAGGGGAATTCGTTGGAGTAATGGGACCTTCAGGTAGTGGTAAAACCACATTGTTAAATA
TAATGGCAACTATAGATACTCCTACATCAGGAGAACTTTTTATAAATGGTACAAATCCTACAAAATTAAATGAGAAAAAT
ATTGCTCTGTTTAGAAGAAAAGAACTAGGTTTTATATTTCAAGATTTTAATCTTTTAGATTCTTTGTCTATTAAGGAAAA
TATAATATTACCACTTGTATTAGAGAAGATTAAAGTACGTGAAATAGAAAAGAAAGTAGAAGACATTGCAAATCTTTTAA
ATATTAAAGATATTTTAAATAAAAAGCCTTATGAAATTTCAGGAGGTCAGCAGCAAAGAGCAGCCTGTGCTAGAGCACTT
ATTCATAATCCTTCTATAATCTTAGCGGATGAACCCACAGGAAATCTTGATTCTAAAGCATCTCAAGATGTTATGGAAAC
TTTAACAAATCTAAATGATAAAAAAGAAGCTACTATAATGATGGTTACTCATGATCCTTTTTCTGCAAGTTTTTGCAAAA
GAATAATTATGATTAAGGATGGAAAGTATTTTTTAGAAATTGTGAATGGAGGAAATAGGCAAGCATTTTTTAAGGAAATT
ATGGATTCTCTTTCACTGTTAGGAAGTAGATCAAACAATTATACATTGTAG

Protein sequence : 
MSILKVENITKIYGGKKGGMKFKALDKFSLEIEKGEFVGVMGPSGSGKTTLLNIMATIDTPTSGELFINGTNPTKLNEKN
IALFRRKELGFIFQDFNLLDSLSIKENIILPLVLEKIKVREIEKKVEDIANLLNIKDILNKKPYEISGGQQQRAACARAL
IHNPSIILADEPTGNLDSKASQDVMETLTNLNDKKEATIMMVTHDPFSASFCKRIIMIKDGKYFLEIVNGGNRQAFFKEI
MDSLSLLGSRSNNYTL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 4e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLD_0478 YP_001779926.1 peptide ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 3e-35 48
CLD_0478 YP_001779926.1 peptide ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 8e-34 44
CLD_0478 YP_001779926.1 peptide ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 4e-36 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLD_0478 YP_001779926.1 peptide ABC transporter ATP-binding protein VFG0869 Protein 2e-14 41